Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_I17
         (893 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0172 - 6131559-6131990                                           31   1.2  
10_08_0029 + 14270945-14271364,14271449-14272486                       30   2.9  
12_01_1014 - 10309444-10309905                                         28   8.7  

>03_02_0172 - 6131559-6131990
          Length = 143

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = -1

Query: 203 RGXRPQVGRRAREGEMRAPRSRSFLQKXRPPKKPP 99
           RG R   GRRA +   R PRS SFL +   P +PP
Sbjct: 20  RGSRHPRGRRA-DAVSRPPRSSSFLCQSSSPSEPP 53


>10_08_0029 + 14270945-14271364,14271449-14272486
          Length = 485

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -1

Query: 176 RAREGEMRAPRSRSFLQKXRPPKKPPHYFWNSSEARXG 63
           RA+     APR R+     +PP  PPH+    S  R G
Sbjct: 365 RAKARSQSAPRQRTEPHLPQPPPPPPHFERQPSRRRGG 402


>12_01_1014 - 10309444-10309905
          Length = 153

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +2

Query: 455 VFLSFISGPGSGGGANQXTAPXWMLPLLLGLYGSVTSALKAAEFLEHC 598
           V  S ++ PG G   +   +P W L L   L+ S++ A+    F   C
Sbjct: 84  VTCSMVAAPGGGAHGHGAASPMWELHLTGELFWSLSMAVAMFSFSRVC 131


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,525,141
Number of Sequences: 37544
Number of extensions: 365945
Number of successful extensions: 1015
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)