Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_I17
         (893 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021503-4|CAA16418.1|  352|Caenorhabditis elegans Hypothetical ...    32   0.64 
L15347-1|AAA28142.1|  813|Caenorhabditis elegans raf proto-oncog...    28   7.8  
AY493414-1|AAR86713.1|  769|Caenorhabditis elegans LIN-45 isofor...    28   7.8  
AY493413-1|AAR86712.1|  813|Caenorhabditis elegans LIN-45 isofor...    28   7.8  
AY455928-1|AAR26307.1|  813|Caenorhabditis elegans LIN-45 protein.     28   7.8  
AC024204-7|AAM97982.1|  614|Caenorhabditis elegans Abnormal cell...    28   7.8  
AC024204-6|AAF36042.1|  813|Caenorhabditis elegans Abnormal cell...    28   7.8  

>AL021503-4|CAA16418.1|  352|Caenorhabditis elegans Hypothetical
           protein Y68A4A.7 protein.
          Length = 352

 Score = 31.9 bits (69), Expect = 0.64
 Identities = 20/67 (29%), Positives = 30/67 (44%)
 Frame = +3

Query: 339 ALHALPDPACSTLRLCFVFCSAPLQIQALKNQKVNW*V*SFCLLFQVPDPVVVQIKXLLL 518
           A H L  P      L +  C AP +  +   Q     V  FC+LFQ   P+++ +  L L
Sbjct: 219 AFHLLIFPLFQVATLIYYICIAPSKTTSKDTQNKQK-VFLFCILFQTSVPIILGVCPLSL 277

Query: 519 XGCCLYF 539
             CC+ +
Sbjct: 278 --CCIAY 282


>L15347-1|AAA28142.1|  813|Caenorhabditis elegans raf proto-oncogene
           protein.
          Length = 813

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 155 RAPRSRSFLQKXRPPKKPPHYFW 87
           R+P  R   Q+ RPP+KP H  W
Sbjct: 452 RSPGERLDAQRPRPPQKPHHEDW 474


>AY493414-1|AAR86713.1|  769|Caenorhabditis elegans LIN-45 isoform 3
           protein.
          Length = 769

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 155 RAPRSRSFLQKXRPPKKPPHYFW 87
           R+P  R   Q+ RPP+KP H  W
Sbjct: 408 RSPGERLDAQRPRPPQKPHHEDW 430


>AY493413-1|AAR86712.1|  813|Caenorhabditis elegans LIN-45 isoform 2
           protein.
          Length = 813

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 155 RAPRSRSFLQKXRPPKKPPHYFW 87
           R+P  R   Q+ RPP+KP H  W
Sbjct: 452 RSPGERLDAQRPRPPQKPHHEDW 474


>AY455928-1|AAR26307.1|  813|Caenorhabditis elegans LIN-45 protein.
          Length = 813

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 155 RAPRSRSFLQKXRPPKKPPHYFW 87
           R+P  R   Q+ RPP+KP H  W
Sbjct: 452 RSPGERLDAQRPRPPQKPHHEDW 474


>AC024204-7|AAM97982.1|  614|Caenorhabditis elegans Abnormal cell
           lineage protein 45,isoform b protein.
          Length = 614

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 155 RAPRSRSFLQKXRPPKKPPHYFW 87
           R+P  R   Q+ RPP+KP H  W
Sbjct: 494 RSPGERLDAQRPRPPQKPHHEDW 516


>AC024204-6|AAF36042.1|  813|Caenorhabditis elegans Abnormal cell
           lineage protein 45,isoform a protein.
          Length = 813

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 155 RAPRSRSFLQKXRPPKKPPHYFW 87
           R+P  R   Q+ RPP+KP H  W
Sbjct: 452 RSPGERLDAQRPRPPQKPHHEDW 474


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,272,164
Number of Sequences: 27780
Number of extensions: 268086
Number of successful extensions: 521
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)