Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_I15
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...    49   1e-06
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    27   4.6  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   8.1  

>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 48.8 bits (111), Expect = 1e-06
 Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 1/139 (0%)
 Frame = +2

Query: 116 MKIYKDIITG**DVL*HLQNEIGSMK-VIYESDGXVG*REHRGDIQIEGFXSFG*RGLTR 292
           M +YKD+I+G  D L     ++  +  ++YE+D  +   +  GD+ I    S        
Sbjct: 1   MLLYKDVISG--DELVSDAYDLKEVDDIVYEADCQMVTVKQGGDVDIGANPSA--EDAEE 56

Query: 293 GTDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMXXXXXXXXXXXPDQVXVFKXXM 472
             +   E+  ++V + RL  T +F DKKSY  Y+K YM           P++V VF+   
Sbjct: 57  NAEEGTETVNNLVYSFRLSPT-SF-DKKSYMSYIKGYMKAIKARLQESNPERVPVFEKNA 114

Query: 473 NKVMKDILGRFXELQFFTG 529
              +K IL  F +  F+ G
Sbjct: 115 IGFVKKILANFKDYDFYIG 133



 Score = 34.7 bits (76), Expect = 0.017
 Identities = 20/46 (43%), Positives = 24/46 (52%)
 Frame = +3

Query: 498 AGLXNFSSLXGESMDCDGXVAMMEYXXFDGTXXPIMMFFKPGLXXE 635
           A   ++    GESMD D  V +M Y   DG   P M+FFK GL  E
Sbjct: 123 ANFKDYDFYIGESMDPDAMVVLMNYRE-DG-ITPYMIFFKDGLVSE 166


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 17/48 (35%), Positives = 29/48 (60%)
 Frame = -3

Query: 324 STPLSTAESVPLVSPLQPKDXNPSIWISPLCSRHPTYPSLS*ITFIDP 181
           ST + ++ + P  SPL   D +PS  I  + + HPT+PS S + +++P
Sbjct: 274 STQIRSSSTSPPRSPLIISD-SPSSSI--IHNPHPTHPSASAMNYMNP 318


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +2

Query: 800 PGFPPIXXT*PPXXPPPXPXXXPPP 874
           PG PP     P   PP  P   PPP
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPP 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,943,960
Number of Sequences: 5004
Number of extensions: 54277
Number of successful extensions: 153
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)