Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_I14
         (866 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr...   162   5e-41
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    26   8.0  

>SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 322

 Score =  162 bits (394), Expect = 5e-41
 Identities = 85/164 (51%), Positives = 106/164 (64%)
 Frame = +1

Query: 199 VADTGDFEAXKEYKPTDATTNPSLILSAAGMEQYQHILDKAIKYGXDNGSSIEEXVAXTL 378
           V+DTGDFE+  +YKP DATTNPSLIL+A+   QY  ++D A+ Y    G SI   +    
Sbjct: 15  VSDTGDFESIAKYKPQDATTNPSLILAASKKPQYAALVDAAVDYAKAKGGSINSQIEIAF 74

Query: 379 DMLSVLFGCEILQIIPGRVSVXVDAXXSFDKDASIAKAIKFIXLFAEHGXKXXRLLITLA 558
           D L + FG +IL I+PGRVS  VDA  SFD   +I KA   I L+   G    R+LI +A
Sbjct: 75  DRLLIEFGTKILAIVPGRVSTEVDARYSFDTQTTIEKARHLIKLYEAEGIGRERVLIKIA 134

Query: 559 STWXGXQAAKELEKTHGIXXXLTLLFXLYQAIACAXAHVTLISP 690
           ST+ G QAAK+LE+  GI   LTLLF   QA+ACA A+VTLISP
Sbjct: 135 STYEGIQAAKQLEE-EGIHCNLTLLFSFVQAVACAEANVTLISP 177


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 18/67 (26%), Positives = 29/67 (43%)
 Frame = +1

Query: 190 PLXVADTGDFEAXKEYKPTDATTNPSLILSAAGMEQYQHILDKAIKYGXDNGSSIEEXVA 369
           P  +AD  +     + +  D  T   L+L + G+E Y    D A      N  S+EE + 
Sbjct: 272 PTTIADYKEVAIQNKIEDDDTWTAQELVLLSEGVEMYSD--DWAKVASHVNTKSVEECIL 329

Query: 370 XTLDMLS 390
             L++ S
Sbjct: 330 KFLNLPS 336


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,816,001
Number of Sequences: 5004
Number of extensions: 46188
Number of successful extensions: 78
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)