Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_I09
(873 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 71 2e-13
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 40 3e-04
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 39 8e-04
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 36 0.006
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 29 1.1
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 27 2.6
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 2.6
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 2.6
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 26 6.1
SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera... 26 8.1
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 26 8.1
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 71.3 bits (167), Expect = 2e-13
Identities = 45/138 (32%), Positives = 58/138 (42%), Gaps = 12/138 (8%)
Frame = +3
Query: 210 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKE--EADRCYRCNG 383
CY C GH ARECT+G + C+ CN+TGH A +C E + CY C
Sbjct: 19 CYNCGENGHQARECTKGSI-------------CYNCNQTGHKASECTEPQQEKTCYACGT 65
Query: 384 XGHIARECAQSPGRAVMLQLQQDGATSH--------GTVPRG--GGSLXRRPAITATSPG 533
GH+ R+C SP + + G H G G GG S G
Sbjct: 66 AGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYG 125
Query: 534 XISRNCPDGTQTCYVCGK 587
+R+C G + CY CGK
Sbjct: 126 HQARDCTMGVK-CYSCGK 142
Score = 68.9 bits (161), Expect = 9e-13
Identities = 34/93 (36%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Frame = +3
Query: 180 SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDS-GFNRQREKCFKCNRTGHFARDCKEE 356
S P + CYKC R GH AR+C G S G +R C+ C GH ARDC
Sbjct: 75 SSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMG 134
Query: 357 ADRCYRCNGXGHIARECAQSPGRAVMLQLQQDG 455
+CY C GH + EC Q+ + + Q G
Sbjct: 135 V-KCYSCGKIGHRSFECQQASDGQLCYKCNQPG 166
Score = 44.0 bits (99), Expect = 3e-05
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +3
Query: 291 RQREKCFKCNRTGHFARDCKEEADRCYRCNGXGHIARECAQ 413
R +C+ C GH AR+C + CY CN GH A EC +
Sbjct: 14 RPGPRCYNCGENGHQAREC-TKGSICYNCNQTGHKASECTE 53
Score = 35.1 bits (77), Expect = 0.013
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 6/86 (6%)
Frame = +3
Query: 363 RCYRCNGXGHIARECAQSPGRAVMLQLQQDG-ATSHGTVPRGGGSLXRRPAITATSPGXI 539
RCY C GH AREC + ++ Q G S T P+ + + G +
Sbjct: 18 RCYNCGENGHQARECTKG---SICYNCNQTGHKASECTEPQ-----QEKTCYACGTAGHL 69
Query: 540 SRNCPDGTQ-----TCYVCGKPXNLA 602
R+CP CY CG+ ++A
Sbjct: 70 VRDCPSSPNPRQGAECYKCGRVGHIA 95
Score = 31.9 bits (69), Expect = 0.12
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 192 AMSSSVCYKCNRTGHFARECT 254
A +CYKCN+ GH A CT
Sbjct: 153 ASDGQLCYKCNQPGHIAVNCT 173
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 40.3 bits (90), Expect = 3e-04
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = +3
Query: 291 RQREK-CFKCNRTGHFARDCKEEADR---CYRCNGXGHIARECAQ 413
R R+K CF C + GH +DC E D C+RC H C++
Sbjct: 73 RNRDKFCFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSK 117
Score = 39.9 bits (89), Expect = 5e-04
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Frame = +3
Query: 210 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD----RCYRC 377
C+ C + GH ++C + ++D+ CF+C H C ++ +C+ C
Sbjct: 79 CFACRQQGHIVQDCPE----AKDNV-----SICFRCGSKEHSLNACSKKGPLKFAKCFIC 129
Query: 378 NGXGHIARECAQSP 419
+ GH++ +C Q+P
Sbjct: 130 HENGHLSGQCEQNP 143
Score = 37.5 bits (83), Expect = 0.002
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Frame = +3
Query: 204 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKE-------EAD 362
S+C++C H C++ G + + KCF C+ GH + C++ +
Sbjct: 100 SICFRCGSKEHSLNACSKKGPL--------KFAKCFICHENGHLSGQCEQNPKGLYPKGG 151
Query: 363 RCYRCNGXGHIARECAQ 413
C C+ H+A++C Q
Sbjct: 152 CCKFCSSVHHLAKDCDQ 168
Score = 30.3 bits (65), Expect = 0.37
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +3
Query: 180 SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKE 353
SK + + C+ C+ GH + +C Q G + C C+ H A+DC +
Sbjct: 116 SKKGPLKFAKCFICHENGHLSGQCEQ-----NPKGLYPKGGCCKFCSSVHHLAKDCDQ 168
Score = 27.5 bits (58), Expect = 2.6
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Frame = +2
Query: 449 RRGHIARNCPEGGRESATQTCYNCXXSRPHLPQLSRRHP----DLLRVRQAGQSRAECDE 616
++GHI ++CPE + C+ C L S++ P + G +C++
Sbjct: 84 QQGHIVQDCPEA--KDNVSICFRCGSKEHSLNACSKKGPLKFAKCFICHENGHLSGQCEQ 141
Query: 617 APE 625
P+
Sbjct: 142 NPK 144
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 39.1 bits (87), Expect = 8e-04
Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 10/79 (12%)
Frame = +3
Query: 201 SSVCYKCNRTGHFAREC------TQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD 362
S VC+ C GH +++C T G + S +KC C GH A C E
Sbjct: 86 SIVCHNCKGNGHISKDCPHVLCTTCGAIDDHISVRCPWTKKCMNCGLLGHIAARCSEPRK 145
Query: 363 R----CYRCNGXGHIAREC 407
R C C+ H + C
Sbjct: 146 RGPRVCRTCHTDTHTSSTC 164
Score = 28.3 bits (60), Expect = 1.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 318 NRTGHFARDCKEEADRCYRCNGXGHIAREC 407
+R +F D E+ C+ C G GHI+++C
Sbjct: 74 SRGRYFGSD-PSESIVCHNCKGNGHISKDC 102
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 36.3 bits (80), Expect = 0.006
Identities = 21/72 (29%), Positives = 26/72 (36%), Gaps = 5/72 (6%)
Frame = +3
Query: 294 QREKCFKCNRTGHFARDCKEEADR-----CYRCNGXGHIARECAQSPGRAVMLQLQQDGA 458
+ + C C GH DC E + C C GHIAR+C + M D
Sbjct: 307 ENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCPVRDQQPPMADSTADRE 366
Query: 459 TSHGTVPRGGGS 494
GGGS
Sbjct: 367 YQSLMQELGGGS 378
Score = 27.1 bits (57), Expect = 3.5
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = +3
Query: 201 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC 347
+ VC C GH +C + R + + C C GH ARDC
Sbjct: 308 NQVCQNCGNVGHRRFDCPE-----RIN--HTMNIVCRHCGSIGHIARDC 349
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 28.7 bits (61), Expect = 1.1
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +3
Query: 186 PIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFAR 341
P A +V K N GH E G V +S + K + +R G F+R
Sbjct: 384 PKAAPKAVSQKTNVDGHRNHEAKHGNTVQNESKSQKSSNKEGRSSRGGFFSR 435
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 2.6
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +3
Query: 288 NRQREKCFKCNRTGHFARDCKEEA 359
+RQ KC +C RT + +++C+ +A
Sbjct: 492 SRQFAKCRRCRRTKYCSKECQHQA 515
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.5 bits (58), Expect = 2.6
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 204 SVCYKCNRTGHFAREC 251
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
Score = 26.6 bits (56), Expect = 4.6
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +3
Query: 330 HFARDCKEEADRCYRCNGXGHIAREC 407
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.5 bits (58), Expect = 2.6
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 204 SVCYKCNRTGHFAREC 251
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
Score = 26.6 bits (56), Expect = 4.6
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +3
Query: 330 HFARDCKEEADRCYRCNGXGHIAREC 407
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.2 bits (55), Expect = 6.1
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +3
Query: 306 CFKCNRTGHFARDCKEEADRCY 371
C++C + GH+ + C AD Y
Sbjct: 185 CYRCGQKGHWIQACPTNADPNY 206
>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 548
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/49 (26%), Positives = 19/49 (38%)
Frame = +3
Query: 276 DSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGXGHIARECAQSPG 422
D +E KC+ T F ++C E+ D N G E + G
Sbjct: 87 DQNSELSQENLTKCDTTHDFEKNCSEKTDSTSADNIAGFTILEALSATG 135
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 25.8 bits (54), Expect = 8.1
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +2
Query: 542 PQLSRRHPDLLRVRQAGQSRAECDEAPELAAATLFSPLQSNY 667
PQ R P L+ G + A APE ++ FS L NY
Sbjct: 1281 PQYGERVPYLIIAAAPGTTLANRSVAPEEFLSSSFSQLDINY 1322
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,842,264
Number of Sequences: 5004
Number of extensions: 50727
Number of successful extensions: 178
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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