Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_I09
(873 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical ... 63 3e-10
U80837-3|AAB37904.2| 384|Caenorhabditis elegans Hypothetical pr... 47 2e-05
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 47 2e-05
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 47 2e-05
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 46 3e-05
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 46 3e-05
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 46 3e-05
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 46 4e-05
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 46 4e-05
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 46 4e-05
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 38 0.007
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 38 0.007
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 37 0.016
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 37 0.016
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 37 0.016
AC006672-5|AAM98003.1| 42|Caenorhabditis elegans Hypothetical ... 32 0.13
Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical pr... 32 0.62
AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical ... 31 0.81
Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical pr... 31 1.1
U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein. 31 1.1
U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein. 31 1.1
U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical pr... 31 1.1
AL031629-6|CAA20980.2| 948|Caenorhabditis elegans Hypothetical ... 30 2.5
AF100656-7|AAF99964.2| 615|Caenorhabditis elegans Hypothetical ... 30 2.5
AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical ... 30 2.5
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat... 29 4.3
AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical ... 29 4.3
AC006607-7|AAL00855.1| 789|Caenorhabditis elegans Hypothetical ... 29 4.3
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 29 5.7
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 29 5.7
Z82266-6|CAB05176.1| 393|Caenorhabditis elegans Hypothetical pr... 28 7.6
AL132862-31|CAB70234.1| 485|Caenorhabditis elegans Hypothetical... 28 7.6
>AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical
protein K08D12.3a protein.
Length = 151
Score = 62.9 bits (146), Expect = 3e-10
Identities = 41/152 (26%), Positives = 59/152 (38%), Gaps = 16/152 (10%)
Frame = +3
Query: 195 MSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD---- 362
MS CYKC + GH +R C G G C+ C TGHF+RDC +
Sbjct: 1 MSDRNCYKCQQPGHISRNCPNGESDGGRRG-GGGGSTCYNCQETGHFSRDCPKGGSGGGQ 59
Query: 363 --------RCYRCNGXGHIARECAQSPGRAVMLQLQQDGATSHGTVPRGGGSLXRRPAIT 518
CY C G GH +R+C + + G+ +G G S +
Sbjct: 60 RGGGGGGGSCYNCGGRGHYSRDCPSA--------RSEGGSGGYGGRGGEGRSFGGQKCYN 111
Query: 519 ATSPGXISRNCPDG----TQTCYVCGKPXNLA 602
G ISR C + + CY C + +++
Sbjct: 112 CGRSGHISRECTESGSAEEKRCYQCQETGHIS 143
Score = 53.2 bits (122), Expect = 2e-07
Identities = 19/51 (37%), Positives = 31/51 (60%)
Frame = +3
Query: 210 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD 362
CY C R+GH +RECT+ G + + ++C++C TGH +RDC + +
Sbjct: 109 CYNCGRSGHISRECTESG--------SAEEKRCYQCQETGHISRDCPSQTN 151
>U80837-3|AAB37904.2| 384|Caenorhabditis elegans Hypothetical
protein F07E5.5 protein.
Length = 384
Score = 47.2 bits (107), Expect = 2e-05
Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Frame = +3
Query: 198 SSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYR- 374
S VC+KC H EC + GV GF CF C + GH +RDC + + Y
Sbjct: 252 SDGVCFKCGSMEHSIHECKKKGV----KGF--PYATCFVCKQVGHISRDCHQNVNGVYPD 305
Query: 375 ---CNGXG---HIARECAQ 413
CN G H+ R+C +
Sbjct: 306 GGCCNVCGANTHLRRDCPE 324
Score = 45.6 bits (103), Expect = 5e-05
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Frame = +3
Query: 195 MSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADR--- 365
++ S C+ C GH +C + S D CFKC H +CK++ +
Sbjct: 226 ITGSACFHCREPGHRLADCPKRNSSSSDG-------VCFKCGSMEHSIHECKKKGVKGFP 278
Query: 366 ---CYRCNGXGHIARECAQS 416
C+ C GHI+R+C Q+
Sbjct: 279 YATCFVCKQVGHISRDCHQN 298
Score = 28.3 bits (60), Expect = 7.6
Identities = 28/125 (22%), Positives = 41/125 (32%), Gaps = 3/125 (2%)
Frame = +3
Query: 258 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGXGHIARECAQ---SPGRA 428
G V D+ +R K + R G +D K C+ C GH +C + S
Sbjct: 197 GKVTVADAMLLVKRWKTRETRRIGR--QDQKITGSACFHCREPGHRLADCPKRNSSSSDG 254
Query: 429 VMLQLQQDGATSHGTVPRGGGSLXRRPAITATSPGXISRNCPDGTQTCYVCGKPXNLAPS 608
V + + H +G G ISR+C Y G N+ +
Sbjct: 255 VCFKCGSMEHSIHECKKKGVKGFPYATCFVCKQVGHISRDCHQNVNGVYPDGGCCNVCGA 314
Query: 609 ATRXR 623
T R
Sbjct: 315 NTHLR 319
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 47.2 bits (107), Expect = 2e-05
Identities = 28/76 (36%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Frame = +3
Query: 210 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADR------CY 371
C C GHFA +C Q V R C C + GHFA+DC+ E R C
Sbjct: 618 CRNCGIEGHFAVDCDQPKV---------PRGPCRNCGQEGHFAKDCQNERVRMEPTEPCR 668
Query: 372 RCNGXGHIARECAQSP 419
RC GH EC P
Sbjct: 669 RCAEEGHWGYECPTRP 684
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Frame = +3
Query: 210 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKE---EADRCYRCN 380
C+ C GH ++EC + V R C C + GHFA DC + C C
Sbjct: 572 CHNCGEEGHISKECDKPKV---------PRFPCRNCEQLGHFASDCDQPRVPRGPCRNCG 622
Query: 381 GXGHIARECAQ 413
GH A +C Q
Sbjct: 623 IEGHFAVDCDQ 633
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 47.2 bits (107), Expect = 2e-05
Identities = 28/76 (36%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Frame = +3
Query: 210 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADR------CY 371
C C GHFA +C Q V R C C + GHFA+DC+ E R C
Sbjct: 618 CRNCGIEGHFAVDCDQPKV---------PRGPCRNCGQEGHFAKDCQNERVRMEPTEPCR 668
Query: 372 RCNGXGHIARECAQSP 419
RC GH EC P
Sbjct: 669 RCAEEGHWGYECPTRP 684
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Frame = +3
Query: 210 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKE---EADRCYRCN 380
C+ C GH ++EC + V R C C + GHFA DC + C C
Sbjct: 572 CHNCGEEGHISKECDKPKV---------PRFPCRNCEQLGHFASDCDQPRVPRGPCRNCG 622
Query: 381 GXGHIARECAQ 413
GH A +C Q
Sbjct: 623 IEGHFAVDCDQ 633
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 46.4 bits (105), Expect = 3e-05
Identities = 30/94 (31%), Positives = 37/94 (39%), Gaps = 27/94 (28%)
Frame = +3
Query: 207 VCYKCNRTGHFARECTQ-------------GGV----------VSRDSGFNRQRE----K 305
VCY C + GH +RECT+ GG D GF E K
Sbjct: 184 VCYNCQQPGHTSRECTEERKPREGRTGGFGGGAGFGNNGGNDGFGGDGGFGGGEERGPMK 243
Query: 306 CFKCNRTGHFARDCKEEADRCYRCNGXGHIAREC 407
CF C GH + +C E C+ C GH + EC
Sbjct: 244 CFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC 277
Score = 44.8 bits (101), Expect = 8e-05
Identities = 34/118 (28%), Positives = 44/118 (37%), Gaps = 16/118 (13%)
Frame = +3
Query: 282 GFNRQREKCFKCNRTGHFARDC----KEEADR-CYRCNGXGHIARECAQS----PGRAVM 434
G + CF C + GH + DC KE R CY C GH +REC + GR
Sbjct: 152 GGGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERKPREGRTGG 211
Query: 435 LQLQQDGATSHGTVPRG-----GGSLXRRP--AITATSPGXISRNCPDGTQTCYVCGK 587
+ G G GG R P G S CP+ + C+ CG+
Sbjct: 212 FGGGAGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGE 269
Score = 30.3 bits (65), Expect = 1.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 455 GHIARNCPEGGRESATQTCYNC 520
GH + +CPE +E + CYNC
Sbjct: 167 GHRSSDCPEPRKEREPRVCYNC 188
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 46.4 bits (105), Expect = 3e-05
Identities = 30/94 (31%), Positives = 37/94 (39%), Gaps = 27/94 (28%)
Frame = +3
Query: 207 VCYKCNRTGHFARECTQ-------------GGV----------VSRDSGFNRQRE----K 305
VCY C + GH +RECT+ GG D GF E K
Sbjct: 184 VCYNCQQPGHTSRECTEERKPREGRTGGFGGGAGFGNNGGNDGFGGDGGFGGGEERGPMK 243
Query: 306 CFKCNRTGHFARDCKEEADRCYRCNGXGHIAREC 407
CF C GH + +C E C+ C GH + EC
Sbjct: 244 CFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC 277
Score = 44.8 bits (101), Expect = 8e-05
Identities = 34/118 (28%), Positives = 44/118 (37%), Gaps = 16/118 (13%)
Frame = +3
Query: 282 GFNRQREKCFKCNRTGHFARDC----KEEADR-CYRCNGXGHIARECAQS----PGRAVM 434
G + CF C + GH + DC KE R CY C GH +REC + GR
Sbjct: 152 GGGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERKPREGRTGG 211
Query: 435 LQLQQDGATSHGTVPRG-----GGSLXRRP--AITATSPGXISRNCPDGTQTCYVCGK 587
+ G G GG R P G S CP+ + C+ CG+
Sbjct: 212 FGGGAGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGE 269
Score = 30.3 bits (65), Expect = 1.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 455 GHIARNCPEGGRESATQTCYNC 520
GH + +CPE +E + CYNC
Sbjct: 167 GHRSSDCPEPRKEREPRVCYNC 188
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 46.4 bits (105), Expect = 3e-05
Identities = 30/94 (31%), Positives = 37/94 (39%), Gaps = 27/94 (28%)
Frame = +3
Query: 207 VCYKCNRTGHFARECTQ-------------GGV----------VSRDSGFNRQRE----K 305
VCY C + GH +RECT+ GG D GF E K
Sbjct: 184 VCYNCQQPGHTSRECTEERKPREGRTGGFGGGAGFGNNGGNDGFGGDGGFGGGEERGPMK 243
Query: 306 CFKCNRTGHFARDCKEEADRCYRCNGXGHIAREC 407
CF C GH + +C E C+ C GH + EC
Sbjct: 244 CFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC 277
Score = 44.8 bits (101), Expect = 8e-05
Identities = 34/118 (28%), Positives = 44/118 (37%), Gaps = 16/118 (13%)
Frame = +3
Query: 282 GFNRQREKCFKCNRTGHFARDC----KEEADR-CYRCNGXGHIARECAQS----PGRAVM 434
G + CF C + GH + DC KE R CY C GH +REC + GR
Sbjct: 152 GGGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERKPREGRTGG 211
Query: 435 LQLQQDGATSHGTVPRG-----GGSLXRRP--AITATSPGXISRNCPDGTQTCYVCGK 587
+ G G GG R P G S CP+ + C+ CG+
Sbjct: 212 FGGGAGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGE 269
Score = 30.3 bits (65), Expect = 1.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 455 GHIARNCPEGGRESATQTCYNC 520
GH + +CPE +E + CYNC
Sbjct: 167 GHRSSDCPEPRKEREPRVCYNC 188
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 46.0 bits (104), Expect = 4e-05
Identities = 32/112 (28%), Positives = 43/112 (38%), Gaps = 14/112 (12%)
Frame = +3
Query: 294 QREKCFKCNRTGHFARDC----KEEADR-CYRCNGXGHIARECAQS----PGRAVMLQ-- 440
+ CF C + GH + DC KE R CY C GH +R+C + GR
Sbjct: 369 RNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKPREGRNGFTSGF 428
Query: 441 -LQQDGATSHGTVPRGGGSLXRRP--AITATSPGXISRNCPDGTQTCYVCGK 587
DG G G + R P G S CP+ + C+ CG+
Sbjct: 429 GGGNDGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGE 480
Score = 44.8 bits (101), Expect = 8e-05
Identities = 29/92 (31%), Positives = 37/92 (40%), Gaps = 25/92 (27%)
Frame = +3
Query: 207 VCYKCNRTGHFAREC-------------TQGGVVSRDSGF----------NRQRE--KCF 311
VCY C + GH +R+C T G D GF N +R KCF
Sbjct: 397 VCYNCQQPGHNSRDCPEERKPREGRNGFTSGFGGGNDGGFGGGNAEGFGNNEERGPMKCF 456
Query: 312 KCNRTGHFARDCKEEADRCYRCNGXGHIAREC 407
C GH + +C E C+ C GH + EC
Sbjct: 457 NCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC 488
Score = 39.5 bits (88), Expect = 0.003
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Frame = +3
Query: 294 QREKCFKCNRTGHFARDC----KEEADR-CYRCNGXGHIARECAQ 413
+ CF C + GH + DC KE R CY C GH +R+C +
Sbjct: 255 RNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 299
Score = 36.7 bits (81), Expect = 0.022
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 210 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEE 356
C+ C + GH + +C + R+ C+ C + GH +RDC EE
Sbjct: 259 CFNCQQPGHRSNDCPEPKK-------EREPRVCYNCQQPGHNSRDCPEE 300
Score = 30.7 bits (66), Expect = 1.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 455 GHIARNCPEGGRESATQTCYNC 520
GH + +CPE +E + CYNC
Sbjct: 266 GHRSNDCPEPKKEREPRVCYNC 287
Score = 30.7 bits (66), Expect = 1.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 455 GHIARNCPEGGRESATQTCYNC 520
GH + +CPE +E + CYNC
Sbjct: 380 GHRSNDCPEPKKEREPRVCYNC 401
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 46.0 bits (104), Expect = 4e-05
Identities = 32/112 (28%), Positives = 43/112 (38%), Gaps = 14/112 (12%)
Frame = +3
Query: 294 QREKCFKCNRTGHFARDC----KEEADR-CYRCNGXGHIARECAQS----PGRAVMLQ-- 440
+ CF C + GH + DC KE R CY C GH +R+C + GR
Sbjct: 369 RNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKPREGRNGFTSGF 428
Query: 441 -LQQDGATSHGTVPRGGGSLXRRP--AITATSPGXISRNCPDGTQTCYVCGK 587
DG G G + R P G S CP+ + C+ CG+
Sbjct: 429 GGGNDGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGE 480
Score = 44.8 bits (101), Expect = 8e-05
Identities = 29/92 (31%), Positives = 37/92 (40%), Gaps = 25/92 (27%)
Frame = +3
Query: 207 VCYKCNRTGHFAREC-------------TQGGVVSRDSGF----------NRQRE--KCF 311
VCY C + GH +R+C T G D GF N +R KCF
Sbjct: 397 VCYNCQQPGHNSRDCPEERKPREGRNGFTSGFGGGNDGGFGGGNAEGFGNNEERGPMKCF 456
Query: 312 KCNRTGHFARDCKEEADRCYRCNGXGHIAREC 407
C GH + +C E C+ C GH + EC
Sbjct: 457 NCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC 488
Score = 39.5 bits (88), Expect = 0.003
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Frame = +3
Query: 294 QREKCFKCNRTGHFARDC----KEEADR-CYRCNGXGHIARECAQ 413
+ CF C + GH + DC KE R CY C GH +R+C +
Sbjct: 255 RNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 299
Score = 36.7 bits (81), Expect = 0.022
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 210 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEE 356
C+ C + GH + +C + R+ C+ C + GH +RDC EE
Sbjct: 259 CFNCQQPGHRSNDCPEPKK-------EREPRVCYNCQQPGHNSRDCPEE 300
Score = 30.7 bits (66), Expect = 1.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 455 GHIARNCPEGGRESATQTCYNC 520
GH + +CPE +E + CYNC
Sbjct: 266 GHRSNDCPEPKKEREPRVCYNC 287
Score = 30.7 bits (66), Expect = 1.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 455 GHIARNCPEGGRESATQTCYNC 520
GH + +CPE +E + CYNC
Sbjct: 380 GHRSNDCPEPKKEREPRVCYNC 401
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 46.0 bits (104), Expect = 4e-05
Identities = 32/112 (28%), Positives = 43/112 (38%), Gaps = 14/112 (12%)
Frame = +3
Query: 294 QREKCFKCNRTGHFARDC----KEEADR-CYRCNGXGHIARECAQS----PGRAVMLQ-- 440
+ CF C + GH + DC KE R CY C GH +R+C + GR
Sbjct: 369 RNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKPREGRNGFTSGF 428
Query: 441 -LQQDGATSHGTVPRGGGSLXRRP--AITATSPGXISRNCPDGTQTCYVCGK 587
DG G G + R P G S CP+ + C+ CG+
Sbjct: 429 GGGNDGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGE 480
Score = 44.8 bits (101), Expect = 8e-05
Identities = 29/92 (31%), Positives = 37/92 (40%), Gaps = 25/92 (27%)
Frame = +3
Query: 207 VCYKCNRTGHFAREC-------------TQGGVVSRDSGF----------NRQRE--KCF 311
VCY C + GH +R+C T G D GF N +R KCF
Sbjct: 397 VCYNCQQPGHNSRDCPEERKPREGRNGFTSGFGGGNDGGFGGGNAEGFGNNEERGPMKCF 456
Query: 312 KCNRTGHFARDCKEEADRCYRCNGXGHIAREC 407
C GH + +C E C+ C GH + EC
Sbjct: 457 NCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC 488
Score = 39.5 bits (88), Expect = 0.003
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Frame = +3
Query: 294 QREKCFKCNRTGHFARDC----KEEADR-CYRCNGXGHIARECAQ 413
+ CF C + GH + DC KE R CY C GH +R+C +
Sbjct: 255 RNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 299
Score = 36.7 bits (81), Expect = 0.022
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 210 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEE 356
C+ C + GH + +C + R+ C+ C + GH +RDC EE
Sbjct: 259 CFNCQQPGHRSNDCPEPKK-------EREPRVCYNCQQPGHNSRDCPEE 300
Score = 30.7 bits (66), Expect = 1.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 455 GHIARNCPEGGRESATQTCYNC 520
GH + +CPE +E + CYNC
Sbjct: 266 GHRSNDCPEPKKEREPRVCYNC 287
Score = 30.7 bits (66), Expect = 1.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 455 GHIARNCPEGGRESATQTCYNC 520
GH + +CPE +E + CYNC
Sbjct: 380 GHRSNDCPEPKKEREPRVCYNC 401
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 38.3 bits (85), Expect = 0.007
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +3
Query: 306 CFKCNRTGHFARDCKEEADRCYRCNGXGHIARECA 410
CF C + GH A +C C C H A ECA
Sbjct: 204 CFNCKKYGHRATECSAPQRECANCGDPNHRANECA 238
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 38.3 bits (85), Expect = 0.007
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +3
Query: 306 CFKCNRTGHFARDCKEEADRCYRCNGXGHIARECA 410
CF C + GH A +C C C H A ECA
Sbjct: 204 CFNCKKYGHRATECSAPQRECANCGDPNHRANECA 238
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 37.1 bits (82), Expect = 0.016
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +3
Query: 201 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADR-CYRC 377
S C C + G C++ S+D+ +KC +C ++G C + +R C+RC
Sbjct: 628 SDRCSDCQQRGWHMFWCSKK---SKDNA----SQKCDECQQSGWHMASCFKLKNRACFRC 680
Query: 378 NGXGHIAREC 407
N GHIA C
Sbjct: 681 NEMGHIAWNC 690
Score = 31.5 bits (68), Expect = 0.81
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 246 ECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEE 356
EC Q G S F + CF+CN GH A +C ++
Sbjct: 658 ECQQSGW-HMASCFKLKNRACFRCNEMGHIAWNCPKK 693
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 37.1 bits (82), Expect = 0.016
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +3
Query: 201 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADR-CYRC 377
S C C + G C++ S+D+ +KC +C ++G C + +R C+RC
Sbjct: 531 SDRCSDCQQRGWHMFWCSKK---SKDNA----SQKCDECQQSGWHMASCFKLKNRACFRC 583
Query: 378 NGXGHIAREC 407
N GHIA C
Sbjct: 584 NEMGHIAWNC 593
Score = 31.5 bits (68), Expect = 0.81
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 246 ECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEE 356
EC Q G S F + CF+CN GH A +C ++
Sbjct: 561 ECQQSGW-HMASCFKLKNRACFRCNEMGHIAWNCPKK 596
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 37.1 bits (82), Expect = 0.016
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +3
Query: 201 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADR-CYRC 377
S C C + G C++ S+D+ +KC +C ++G C + +R C+RC
Sbjct: 542 SDRCSDCQQRGWHMFWCSKK---SKDNA----SQKCDECQQSGWHMASCFKLKNRACFRC 594
Query: 378 NGXGHIAREC 407
N GHIA C
Sbjct: 595 NEMGHIAWNC 604
Score = 31.5 bits (68), Expect = 0.81
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 246 ECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEE 356
EC Q G S F + CF+CN GH A +C ++
Sbjct: 572 ECQQSGW-HMASCFKLKNRACFRCNEMGHIAWNCPKK 607
>AC006672-5|AAM98003.1| 42|Caenorhabditis elegans Hypothetical
protein K08D12.3b protein.
Length = 42
Score = 31.9 bits (69), Expect = 0.62
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 195 MSSSVCYKCNRTGHFARECTQG 260
MS CYKC + GH +R C G
Sbjct: 1 MSDRNCYKCQQPGHISRNCPNG 22
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +3
Query: 306 CFKCNRTGHFARDCKE-EADRCYRCNGXGHI 395
C+KC + GH +R+C E+D R G G +
Sbjct: 6 CYKCQQPGHISRNCPNGESDGGRRGGGGGGV 36
Score = 27.5 bits (58), Expect(2) = 0.13
Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Frame = +3
Query: 357 ADR-CYRCNGXGHIAREC 407
+DR CY+C GHI+R C
Sbjct: 2 SDRNCYKCQQPGHISRNC 19
Score = 25.8 bits (54), Expect(2) = 0.13
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +3
Query: 528 PGXISRNCPDG 560
PG ISRNCP+G
Sbjct: 12 PGHISRNCPNG 22
>Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical
protein F11A10.8 protein.
Length = 302
Score = 31.9 bits (69), Expect = 0.62
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 195 MSSSVCYKCNRTGHFARECTQGGV 266
+S CYKC GH+A C +G +
Sbjct: 247 LSDVTCYKCGEKGHYANRCHKGAL 270
Score = 30.7 bits (66), Expect = 1.4
Identities = 21/81 (25%), Positives = 30/81 (37%), Gaps = 1/81 (1%)
Frame = +3
Query: 168 AQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC 347
A +KP + C+ C+ GH A C +R + + R D
Sbjct: 192 AVSHAKPTYSQAITCHNCHERGHKATTCPHLPGQTRQNQDHHHRVDL-------SLIPDK 244
Query: 348 KEEAD-RCYRCNGXGHIAREC 407
K +D CY+C GH A C
Sbjct: 245 KNLSDVTCYKCGEKGHYANRC 265
>AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical
protein R52.2 protein.
Length = 1019
Score = 31.5 bits (68), Expect = 0.81
Identities = 20/65 (30%), Positives = 23/65 (35%), Gaps = 2/65 (3%)
Frame = +3
Query: 204 SVCYKCNRTGHFAR--ECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRC 377
S C C+ T H R EC R+ CF C R+GH C C C
Sbjct: 312 SPCIFCSSTSHVHRHEECPIFNTAEARIQKAREIGLCFGCLRSGHQRSKCSRPR-TCNHC 370
Query: 378 NGXGH 392
G H
Sbjct: 371 KGNHH 375
>Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical
protein F02E9.2b protein.
Length = 196
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +3
Query: 303 KCFKCNRTG-HFARDC---KEEADRCYRCNGXGHIARECAQ 413
+CF+C + H A+ C K +A CY C H++ C +
Sbjct: 112 RCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPE 152
>Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical
protein F02E9.2a protein.
Length = 227
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +3
Query: 303 KCFKCNRTG-HFARDC---KEEADRCYRCNGXGHIARECAQ 413
+CF+C + H A+ C K +A CY C H++ C +
Sbjct: 143 RCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPE 183
>U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein.
Length = 227
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +3
Query: 303 KCFKCNRTG-HFARDC---KEEADRCYRCNGXGHIARECAQ 413
+CF+C + H A+ C K +A CY C H++ C +
Sbjct: 143 RCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPE 183
>U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein.
Length = 227
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +3
Query: 303 KCFKCNRTG-HFARDC---KEEADRCYRCNGXGHIARECAQ 413
+CF+C + H A+ C K +A CY C H++ C +
Sbjct: 143 RCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPE 183
>U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical protein
K10D2.3 protein.
Length = 1425
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +3
Query: 210 CYKCNRTGHFARECTQGGVV--SRDSGFNRQREKCFKCNRTGHFARDCKEEADR 365
C++C+R GHF C Q + +R + ++ N +G ++ +E DR
Sbjct: 1357 CHQCHRIGHFVESCPQRALAKEARKRFGSNSTNSSYRSNDSGRGFKNGEEGGDR 1410
>AL031629-6|CAA20980.2| 948|Caenorhabditis elegans Hypothetical
protein Y106G6D.7 protein.
Length = 948
Score = 29.9 bits (64), Expect = 2.5
Identities = 40/175 (22%), Positives = 63/175 (36%), Gaps = 2/175 (1%)
Frame = +3
Query: 171 QEFSKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 350
++F + ++ V + N E QGG RD+ FN+ FK N ++ +
Sbjct: 230 KQFGNKLGNNNDVSSRENHIQGSGNERVQGGDSWRDTSFNQPPRNDFKGNYNNAYSSNKY 289
Query: 351 EEADRCYRCNGXGHIARECAQSPGR-AVMLQLQQDGATSHGTVPRGGGSLXRRP-AITAT 524
+ + N + + Q P R A L ++ A T G +L P A
Sbjct: 290 KNNYKAPEFNNDFNGGNKFNQFPPRNAQSTDLSENRAAPPQT---GRKTLMPTPQAPFQN 346
Query: 525 SPGXISRNCPDGTQTCYVCGKPXNLAPSATRXRN*PQPPCSPLYNPTMYIMIAPP 689
+P + D + G P NL + PP P+ M IAPP
Sbjct: 347 APAPFTNGPSDDVNRPFQTGPPGNLGRNGPPPFQAGVPP--PVIQNNMGRPIAPP 399
>AF100656-7|AAF99964.2| 615|Caenorhabditis elegans Hypothetical
protein F49F1.8 protein.
Length = 615
Score = 29.9 bits (64), Expect = 2.5
Identities = 10/36 (27%), Positives = 14/36 (38%)
Frame = +3
Query: 210 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKC 317
C+ C GH AR C + + G+ Q C
Sbjct: 576 CHYCKNVGHMARNCKKKAFAEKRKGYEDQARSITSC 611
Score = 29.1 bits (62), Expect = 4.3
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 291 RQREKCFKCNRTGHFARDCKEEA 359
R + +C C GH AR+CK++A
Sbjct: 571 RFKGQCHYCKNVGHMARNCKKKA 593
>AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical
protein F54G2.2 protein.
Length = 1023
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/55 (23%), Positives = 23/55 (41%)
Frame = +3
Query: 201 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADR 365
+ +C +C + G C+ + + R +CF C GH + C + DR
Sbjct: 578 NGICAECKQVGGHEPSCS---LAPKTWKRERPPPQCFTCGEMGHISTYCPKRIDR 629
>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
see also lmb-protein 1 protein.
Length = 1067
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +3
Query: 243 RECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGXGHIARECAQ-SP 419
R C Q + + GF K C+ G DC +++ +C C G R+C Q P
Sbjct: 825 RRCDQCAIGTY--GFGPSGCKKCDCDAVGSLGNDCDKQSGQCV-CREKGIYGRQCNQCQP 881
Query: 420 G 422
G
Sbjct: 882 G 882
>AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical
protein K02F6.1 protein.
Length = 783
Score = 29.1 bits (62), Expect = 4.3
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3
Query: 366 CYRCNGXGHIARECAQS 416
CY+C GH++++C QS
Sbjct: 313 CYKCKVVGHVSKDCPQS 329
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 210 CYKCNRTGHFARECTQGGVVSRDSGF-NRQRE 302
CYKC GH +++C Q S +SG NR+ E
Sbjct: 313 CYKCKVVGHVSKDCPQS---STNSGVTNRKTE 341
>AC006607-7|AAL00855.1| 789|Caenorhabditis elegans Hypothetical
protein C09E7.9 protein.
Length = 789
Score = 29.1 bits (62), Expect = 4.3
Identities = 19/62 (30%), Positives = 26/62 (41%)
Frame = +3
Query: 585 KPXNLAPSATRXRN*PQPPCSPLYNPTMYIMIAPPRXISQGRHAXXKRITDYPXXMHTRX 764
K N+ P T P LYN +IMI+ R + +H +TDY + TR
Sbjct: 26 KTKNVTPILTLSGEFCVPGIHALYN-IFHIMISVLRIFQKVKHDTWHLVTDYVNILETRL 84
Query: 765 PP 770
P
Sbjct: 85 KP 86
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 28.7 bits (61), Expect = 5.7
Identities = 26/95 (27%), Positives = 33/95 (34%), Gaps = 1/95 (1%)
Frame = +3
Query: 210 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGXG 389
C C H + EC V+ KC C GH ++DCK N G
Sbjct: 430 CSNCGSDEHKSWECPDAPNVTNQI-------KCTNCGAFGHISKDCK---------NPKG 473
Query: 390 HIARECAQSPG-RAVMLQLQQDGATSHGTVPRGGG 491
A E A+M +L + A G GGG
Sbjct: 474 MYASEAGMDDEYSALMAELGETPAAGAGAGGGGGG 508
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 28.7 bits (61), Expect = 5.7
Identities = 26/95 (27%), Positives = 33/95 (34%), Gaps = 1/95 (1%)
Frame = +3
Query: 210 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGXG 389
C C H + EC V+ KC C GH ++DCK N G
Sbjct: 430 CSNCGSDEHKSWECPDAPNVTNQI-------KCTNCGAFGHISKDCK---------NPKG 473
Query: 390 HIARECAQSPG-RAVMLQLQQDGATSHGTVPRGGG 491
A E A+M +L + A G GGG
Sbjct: 474 MYASEAGMDDEYSALMAELGETPAAGAGAGGGGGG 508
>Z82266-6|CAB05176.1| 393|Caenorhabditis elegans Hypothetical
protein F23B2.10 protein.
Length = 393
Score = 28.3 bits (60), Expect = 7.6
Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
Frame = +3
Query: 198 SSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD-RCYR 374
SS +C CN+ F +C + ++ F + F D KE + C +
Sbjct: 41 SSDICSICNQIDSFGVKCINRSAME----MVEMKKNAFSFSDIWIFKFDPKEHFNGPCSK 96
Query: 375 CNGXGHIARECAQSPGRAVML 437
CN + R C S +A +L
Sbjct: 97 CNDYSTMLRVCTNSAVQAGLL 117
>AL132862-31|CAB70234.1| 485|Caenorhabditis elegans Hypothetical
protein Y73F8A.34a protein.
Length = 485
Score = 28.3 bits (60), Expect = 7.6
Identities = 17/30 (56%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -3
Query: 490 PPPLGTVPCDVAPSCCSCNMTARPGL-CAH 404
PPP G CDV CCS MT GL CAH
Sbjct: 117 PPPGGDAECDV---CCS--MTRLSGLACAH 141
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,127,598
Number of Sequences: 27780
Number of extensions: 349321
Number of successful extensions: 1361
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1269
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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