Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_I08
(959 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 32 0.14
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.32
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 30 0.42
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.0
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 9.1
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 31.9 bits (69), Expect = 0.14
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +3
Query: 819 PXPPPGXXPTXXPXPXSPPQXPPSRXNXRP 908
P PPPG P P P PP R N P
Sbjct: 12 PPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.7 bits (66), Expect = 0.32
Identities = 18/55 (32%), Positives = 20/55 (36%)
Frame = +2
Query: 758 PPPXLXXTPTPXIXLXXTXPPXSSAGIXPNXXPXPXIXPSXAXLPXXXPPXPXXS 922
PPP PTP PP G P P P + + A P PP P S
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGV--AGAGPPPPPPPPPAVS 786
Score = 27.1 bits (57), Expect = 3.9
Identities = 13/38 (34%), Positives = 14/38 (36%)
Frame = +3
Query: 810 LXRPXPPPGXXPTXXPXPXSPPQXPPSRXNXRPXPXSP 923
L P PPP P P P PP+ P P P
Sbjct: 729 LKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766
Score = 26.6 bits (56), Expect = 5.2
Identities = 12/38 (31%), Positives = 14/38 (36%)
Frame = +3
Query: 819 PXPPPGXXPTXXPXPXSPPQXPPSRXNXRPXPXSPXLS 932
P PP PT P P P P P P P ++
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVA 771
Score = 26.2 bits (55), Expect = 6.9
Identities = 13/38 (34%), Positives = 15/38 (39%)
Frame = +2
Query: 800 LXXTXPPXSSAGIXPNXXPXPXIXPSXAXLPXXXPPXP 913
L + PP A I P P P P A + PP P
Sbjct: 728 LLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 30.3 bits (65), Expect = 0.42
Identities = 25/106 (23%), Positives = 34/106 (32%), Gaps = 1/106 (0%)
Frame = +2
Query: 593 PXPRPXXXXRXPXPXPSFXXXXPXVXSXXXPLXAXPPPSXVIXNXPTXXX*XXXIPPPX- 769
P P+P P P PS P P+ P PS I P +PPP
Sbjct: 1141 PVPKPSVAA-PPVPAPSGAPPVPKPSVAAPPV---PAPSSGIPPVPKPAAGVPPVPPPSE 1196
Query: 770 LXXTPTPXIXLXXTXPPXSSAGIXPNXXPXPXIXPSXAXLPXXXPP 907
P P + + PP ++ + P + A P P
Sbjct: 1197 APPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAP 1242
Score = 29.9 bits (64), Expect = 0.56
Identities = 27/98 (27%), Positives = 30/98 (30%), Gaps = 3/98 (3%)
Frame = +2
Query: 638 PSFXXXXPXVXSXXXPLXAXPPPSXVIXNXPTXXX*XXXIPPPXLXXTPTPXIXLXXTXP 817
PS P S PL PP + P PP + T P T P
Sbjct: 992 PSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPP 1051
Query: 818 -PXSSAGI--XPNXXPXPXIXPSXAXLPXXXPPXPXXS 922
P SS+G P P P P PP P S
Sbjct: 1052 VPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPS 1089
Score = 28.3 bits (60), Expect = 1.7
Identities = 25/113 (22%), Positives = 29/113 (25%)
Frame = +2
Query: 599 PRPXXXXRXPXPXPSFXXXXPXVXSXXXPLXAXPPPSXVIXNXPTXXX*XXXIPPPXLXX 778
P P P P PS S P+ P PS P +P P
Sbjct: 1132 PVPVPSGAPPVPKPSVAAPPVPAPSGAPPV---PKPSVAAPPVPAPSSGIPPVPKPAAGV 1188
Query: 779 TPTPXIXLXXTXPPXSSAGIXPNXXPXPXIXPSXAXLPXXXPPXPXXSXPFSP 937
P P PP + P P P PP P + P
Sbjct: 1189 PPVPP---PSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPP 1238
Score = 27.9 bits (59), Expect = 2.2
Identities = 27/118 (22%), Positives = 35/118 (29%)
Frame = +2
Query: 584 TPXPXPRPXXXXRXPXPXPSFXXXXPXVXSXXXPLXAXPPPSXVIXNXPTXXX*XXXIPP 763
T P P P P P V + + + P PS P +P
Sbjct: 1039 TAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGA-PPVPAPSG-IPPVPK 1096
Query: 764 PXLXXTPTPXIXLXXTXPPXSSAGIXPNXXPXPXIXPSXAXLPXXXPPXPXXSXPFSP 937
P + P P + P S G P P P + +P PP P S P
Sbjct: 1097 PSVAAPPVPKPSVAVPPVPAPS-GAPP--VPKPSVAAPPVPVPSGAPPVPKPSVAAPP 1151
Score = 27.1 bits (57), Expect = 3.9
Identities = 25/111 (22%), Positives = 31/111 (27%)
Frame = +2
Query: 605 PXXXXRXPXPXPSFXXXXPXVXSXXXPLXAXPPPSXVIXNXPTXXX*XXXIPPPXLXXTP 784
P P P PS P P+ P PS + P +P P + P
Sbjct: 1077 PAPSGAPPVPAPSGIPPVPKPSVAAPPV---PKPSVAVPPVPAPSG-APPVPKPSVAAPP 1132
Query: 785 TPXIXLXXTXPPXSSAGIXPNXXPXPXIXPSXAXLPXXXPPXPXXSXPFSP 937
P + PP + P P P PP P S P
Sbjct: 1133 VP---VPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPP 1180
Score = 27.1 bits (57), Expect = 3.9
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +3
Query: 819 PXPPPGXXPTXXPXPXSPPQXPPSRXNXRPXP 914
P P G P P PP PPS P P
Sbjct: 1172 PAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKP 1203
Score = 25.8 bits (54), Expect = 9.1
Identities = 13/33 (39%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Frame = +3
Query: 819 PXPPPGXXP-TXXPXPXSPPQXPPSRXNXRPXP 914
P PPP P P PP PPS P P
Sbjct: 1190 PVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTP 1222
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.5 bits (58), Expect = 3.0
Identities = 22/113 (19%), Positives = 30/113 (26%)
Frame = +2
Query: 599 PRPXXXXRXPXPXPSFXXXXPXVXSXXXPLXAXPPPSXVIXNXPTXXX*XXXIPPPXLXX 778
PRP P P P + S P P+ + + P+ +PP
Sbjct: 145 PRPSIPPPSPASAPPIPSKAPPIPSSLPP---PAQPAAPVKSPPSAPSLPSAVPPMPPKV 201
Query: 779 TPTPXIXLXXTXPPXSSAGIXPNXXPXPXIXPSXAXLPXXXPPXPXXSXPFSP 937
P P + P P + P P P S P P
Sbjct: 202 PPPPLSQAPVANTSSRPSSFAPPAGHAPNVTSESPKFPNRGPSIPSASVPPVP 254
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 9.1
Identities = 13/38 (34%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Frame = +3
Query: 819 PXPPP---GXXPTXXPXPXSPPQXPPSRXNXRPXPXSP 923
P PPP P+ P P PP PP P P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,664,607
Number of Sequences: 5004
Number of extensions: 18511
Number of successful extensions: 91
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 491307756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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