Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_I08
(959 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 33 0.30
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 33 0.40
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 33 0.40
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 31 0.93
U14635-1|AAC46657.2| 448|Caenorhabditis elegans Hypothetical pr... 31 0.93
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.6
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.6
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.6
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 30 2.8
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 30 2.8
AC006696-4|AAF39985.1| 215|Caenorhabditis elegans Hypothetical ... 30 2.8
Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z82064-2|CAI79180.1| 167|Caenorhabditis elegans Hypothetical pr... 29 3.7
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 29 3.7
Z82095-2|CAB05027.2| 602|Caenorhabditis elegans Hypothetical pr... 29 4.9
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 29 4.9
Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical pr... 29 6.5
Z82083-3|CAB04971.1| 756|Caenorhabditis elegans Hypothetical pr... 28 8.6
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 28 8.6
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 28 8.6
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 28 8.6
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 28 8.6
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 28 8.6
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 33.1 bits (72), Expect = 0.30
Identities = 28/99 (28%), Positives = 29/99 (29%)
Frame = -1
Query: 641 WGVGXGXGXXXXXGGEGXGLXGXXXXXXXXXXGXXXVGGELTGRXXXRGDS*XGXGTXXN 462
WG G G G GG G G G G GG G RGD G
Sbjct: 40 WGGGGGPGGWGNNGGGGWGRGGGRGGGDWG--GNNGGGGNWGGNGGGRGD--WGGNGGGG 95
Query: 461 XXDXXR*XTXGXXRXXXTXGGXGXVSGXGWGGXXXTGXG 345
R G G G + GWGG G G
Sbjct: 96 RGGGGRGDWGGNNNGGGGNWGGGGNNDGGWGGNNGGGGG 134
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 32.7 bits (71), Expect = 0.40
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +3
Query: 819 PXPPPGXXPTXXPXPXSPPQXPPSR 893
P PPPG P P PP PPSR
Sbjct: 300 PPPPPGRTPGPPGMPGMPPPPPPSR 324
Score = 28.7 bits (61), Expect = 6.5
Identities = 26/101 (25%), Positives = 27/101 (26%)
Frame = +2
Query: 626 PXPXPSFXXXXPXVXSXXXPLXAXPPPSXVIXNXPTXXX*XXXIPPPXLXXTPTPXIXLX 805
P P PS P + PPP P PPP TP P
Sbjct: 264 PPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPP--------PPPPPGRTPGPPGMPG 315
Query: 806 XTXPPXSSAGIXPNXXPXPXIXPSXAXLPXXXPPXPXXSXP 928
PP S P P P P PP P P
Sbjct: 316 MPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYP 356
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 32.7 bits (71), Expect = 0.40
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +3
Query: 819 PXPPPGXXPTXXPXPXSPPQXPPSR 893
P PPPG P P PP PPSR
Sbjct: 310 PPPPPGRTPGPPGMPGMPPPPPPSR 334
Score = 28.7 bits (61), Expect = 6.5
Identities = 26/101 (25%), Positives = 27/101 (26%)
Frame = +2
Query: 626 PXPXPSFXXXXPXVXSXXXPLXAXPPPSXVIXNXPTXXX*XXXIPPPXLXXTPTPXIXLX 805
P P PS P + PPP P PPP TP P
Sbjct: 274 PPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPP--------PPPPPGRTPGPPGMPG 325
Query: 806 XTXPPXSSAGIXPNXXPXPXIXPSXAXLPXXXPPXPXXSXP 928
PP S P P P P PP P P
Sbjct: 326 MPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYP 366
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 31.5 bits (68), Expect = 0.93
Identities = 28/112 (25%), Positives = 31/112 (27%), Gaps = 2/112 (1%)
Frame = +2
Query: 584 TPXPXPRPXXXXRXPXPXPSFXXXXPXVXSXXXPLXAXPPPSXVIXNXPTXXX*XXXIPP 763
T P P P P P P V P PPP P +P
Sbjct: 12 TTYPESAPAATTPQPPPPPPPPKPAPYVEQSAQPQQTAPPP-------PPAPYPQQAVPA 64
Query: 764 PXLXXTPTPXIXLXXTXPPXSS--AGIXPNXXPXPXIXPSXAXLPXXXPPXP 913
P P P + PP +S P P P P A PP P
Sbjct: 65 PAPPPAPYPQHAVPAPAPPLASYPQNAVPVPAPPPAPYPQHAVPAPAPPPAP 116
>U14635-1|AAC46657.2| 448|Caenorhabditis elegans Hypothetical
protein C27H5.3 protein.
Length = 448
Score = 31.5 bits (68), Expect = 0.93
Identities = 18/39 (46%), Positives = 18/39 (46%)
Frame = -2
Query: 931 ERXGXXGXGRXXXREGGX*GGDXGXGXXVGXYPGGGXGR 815
ER G G G GG GG G G G Y GGG GR
Sbjct: 294 ERGGRGGRGGFGGGRGGPMGGRGGFGGDRGGY-GGGGGR 331
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/36 (41%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Frame = +3
Query: 819 PXPPPGXXP-TXXPXPXSPPQXPPSRXNXRPXPXSP 923
P PPPG P T P P PP P P P P
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPP 748
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = +3
Query: 819 PXPPPGXXPTXXPXPXSPPQXPPSRXNXRPXPXSP 923
P PPPG P P PP PP P P P
Sbjct: 744 PPPPPGGLP---PISGGPPPPPPPPGGCPPPPPPP 775
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/36 (41%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Frame = +3
Query: 819 PXPPPGXXP-TXXPXPXSPPQXPPSRXNXRPXPXSP 923
P PPPG P T P P PP P P P P
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPP 748
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = +3
Query: 819 PXPPPGXXPTXXPXPXSPPQXPPSRXNXRPXPXSP 923
P PPPG P P PP PP P P P
Sbjct: 744 PPPPPGGLP---PISGGPPPPPPPPGGCPPPPPPP 775
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/36 (41%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Frame = +3
Query: 819 PXPPPGXXP-TXXPXPXSPPQXPPSRXNXRPXPXSP 923
P PPPG P T P P PP P P P P
Sbjct: 296 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPP 331
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = +3
Query: 819 PXPPPGXXPTXXPXPXSPPQXPPSRXNXRPXPXSP 923
P PPPG P P PP PP P P P
Sbjct: 327 PPPPPGGLP---PISGGPPPPPPPPGGCPPPPPPP 358
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = +3
Query: 819 PXPPPGXXPTXXPXPXSPPQXPPSRXNXRPXPXSP 923
P P PG P P PP P N P P P
Sbjct: 522 PPPMPGMAPLSTGAPTPPPPPPVGMANGGPPPPPP 556
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 29.9 bits (64), Expect = 2.8
Identities = 22/117 (18%), Positives = 29/117 (24%)
Frame = +2
Query: 578 RXTPXPXPRPXXXXRXPXPXPSFXXXXPXVXSXXXPLXAXPPPSXVIXNXPTXXX*XXXI 757
+ TP P P F P + P P + T
Sbjct: 406 KQTPPPTPNAPSHSHQVDQFAEFKLVEPKTPTRVAPPPPPSAPPTIKFPISTGPSYSSTT 465
Query: 758 PPPXLXXTPTPXIXLXXTXPPXSSAGIXPNXXPXPXIXPSXAXLPXXXPPXPXXSXP 928
PP P P + P A + + P P + P PP P P
Sbjct: 466 PPTTPKPAPPPPSRIPNPSPSPQPAEVSKSPPPPPPLPPIATPSSVPPPPPPPPPPP 522
>AC006696-4|AAF39985.1| 215|Caenorhabditis elegans Hypothetical
protein W08E12.6 protein.
Length = 215
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/83 (21%), Positives = 23/83 (27%)
Frame = +2
Query: 659 PXVXSXXXPLXAXPPPSXVIXNXPTXXX*XXXIPPPXLXXTPTPXIXLXXTXPPXSSAGI 838
P V + P PPP+ + P PPP P + PP
Sbjct: 35 PIVIAGPPPCFDCPPPAPIFVAPPPPPCFGPACPPPCFGPACVPLAPIIVNGPPPCFGPA 94
Query: 839 XPNXXPXPXIXPSXAXLPXXXPP 907
P P P + PP
Sbjct: 95 CPPPCFGPACAPPAPIIVNGPPP 117
>Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical
protein C31C9.6 protein.
Length = 965
Score = 29.5 bits (63), Expect = 3.7
Identities = 22/114 (19%), Positives = 32/114 (28%), Gaps = 2/114 (1%)
Frame = +2
Query: 578 RXTPXPXPRPXXXXRXPXPXPSFXXXXPXVXSXXXPLXAXPPPSXVIXNXPTXXX*XXXI 757
+ TP P P F P + P P + T
Sbjct: 399 KQTPPPTPNAPSHSHQVDQFAEFKLVEPKTPTRVAPPPPPSAPPTIKFPISTGTSYSSTT 458
Query: 758 PPPXLXXTPTPXIXLXXTXPPXSSAGIXPNXXPXPXIXP--SXAXLPXXXPPXP 913
PP P P + P A + + P P + P + + +P PP P
Sbjct: 459 PPTTPKPAPPPPSRIPNPSPSPQPAEVSKSPPPPPPLPPIATPSSVPPPPPPPP 512
>Z82064-2|CAI79180.1| 167|Caenorhabditis elegans Hypothetical
protein W02B9.2 protein.
Length = 167
Score = 29.5 bits (63), Expect = 3.7
Identities = 17/39 (43%), Positives = 18/39 (46%)
Frame = -2
Query: 931 ERXGXXGXGRXXXREGGX*GGDXGXGXXVGXYPGGGXGR 815
+R G G R R GG GGD G G Y GG GR
Sbjct: 97 DRGGDRGGDRGGDR-GGDRGGDRGGRRGRGGYRDGGGGR 134
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = +3
Query: 819 PXPPPGXXPTXXPXPXSPPQXPPSRXNXRPXPXSP 923
P PPP P P PP PP P P P
Sbjct: 55 PPPPPCPAQFCPPPPICPPPPPPPMPCPPPPPPMP 89
>Z82095-2|CAB05027.2| 602|Caenorhabditis elegans Hypothetical
protein ZK849.4 protein.
Length = 602
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +3
Query: 816 RPXPPPGXXPTXXPXPXSPPQXPP 887
RP P P P P P PP PP
Sbjct: 482 RPPPSPPALPPALPNPNEPPPPPP 505
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = -2
Query: 922 GXXGXGRXXXREGGX*GGDXGXGXXVGXYPGGGXG 818
G G G R GG GG G G G Y GGG G
Sbjct: 30 GGGGGGYSGGRGGGY-GGGGGGGYGGGGYGGGGRG 63
>Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical
protein T28C6.1 protein.
Length = 281
Score = 28.7 bits (61), Expect = 6.5
Identities = 20/60 (33%), Positives = 21/60 (35%)
Frame = -1
Query: 959 GHTLGGDXERKGXRXRXGAGVXXGGXRLRGXXGXXGXXWXXSRRRXWAXEXXLXQXGGWG 780
G T GG R G R G G G RG G G S W + GGWG
Sbjct: 50 GGTGGG---RGGGRGGSGGGRGGGSGGGRGGSGGAGAGGSGSGSGGWGGQDGGSSAGGWG 106
>Z82083-3|CAB04971.1| 756|Caenorhabditis elegans Hypothetical
protein ZK1010.5 protein.
Length = 756
Score = 28.3 bits (60), Expect = 8.6
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +3
Query: 816 RPXPPPGXXPTXXPXPXSPPQXPPSRXNXRP 908
+P PPP P P P PP PP P
Sbjct: 638 QPPPPPSPSPEPEPEP-KPPVTPPKNETVDP 667
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = -2
Query: 922 GXXGXGRXXXREGGX*GGDXGXGXXVGXYPGGGXGR 815
G G G GG GG G G G GGG GR
Sbjct: 100 GGGGRGGGGGGRGGGGGGGGGRGGGGGGRGGGGRGR 135
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = +3
Query: 825 PPPGXXPTXXPXPXSPPQXPPSRXNXRPXP 914
P P P P P PP P + RP P
Sbjct: 80 PGPSGAPPGPPHPSGPPHRPHPHPSRRPRP 109
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +3
Query: 819 PXPPPGXXPTXXPXPXSPPQXPPS 890
P PPP P P SPP PP+
Sbjct: 92 PPPPPKPTIRPPPIPASPPPRPPA 115
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +3
Query: 819 PXPPPGXXPTXXPXPXSPPQXPPS 890
P PPP P P SPP PP+
Sbjct: 314 PPPPPKPTIRPPPIPASPPPRPPA 337
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 28.3 bits (60), Expect = 8.6
Identities = 12/35 (34%), Positives = 12/35 (34%)
Frame = +3
Query: 819 PXPPPGXXPTXXPXPXSPPQXPPSRXNXRPXPXSP 923
P PPP P PP PP P P P
Sbjct: 561 PPPPPPPLPQNLSGAPPPPPPPPPMLGGPPPPPPP 595
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,369,357
Number of Sequences: 27780
Number of extensions: 172076
Number of successful extensions: 1668
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1331
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2496624284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -