Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_I07
         (822 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    27   2.4  
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    27   3.2  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    26   7.4  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    25   9.8  

>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
 Frame = +1

Query: 388 VDSVRALLNVEGLDESHTMEILKRLNRIVLILKLLVDQVMILETMTPLDFMDFRHYLRPA 567
           VD++  + +     ES + +ILK L+  +  L  ++D +      +     + R+Y R  
Sbjct: 103 VDALIVITSQGERTESFSNDILKVLSEWLTDLFTIIDDMRAQSRKSFKGSAELRNYTRC- 161

Query: 568 SGFQSLQFRLLXN--KLGFETSPAREVQSKLSNRVW 669
             F+ +   LL N  ++GF      EV S L+N VW
Sbjct: 162 --FRQI-ILLLTNMFRVGFNLFDEMEVSSMLANCVW 194


>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 707

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 498 IHQQFQDEHNPVESLQYLHGVAF 430
           IHQ  +D   PV+S  Y+H + F
Sbjct: 417 IHQPSKDSRKPVQSWSYVHSLDF 439


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 552 VPEIHEVERCHRLQNHHLIHQQFQDE 475
           VPE  E E  H  + HH  +  F+D+
Sbjct: 62  VPERDEAEAPHHPKGHHEFNDDFEDD 87


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 334  FIITHQAYELWFKQIIFEVDSVRALLNVEGLDESHTMEILKR 459
            F+I        +  + F +D++ A      LD+++T EILKR
Sbjct: 1310 FVINESHDSALYPLLHFVLDNLPANTKAPELDDTNTREILKR 1351


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,981,172
Number of Sequences: 5004
Number of extensions: 53351
Number of successful extensions: 129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)