Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_I06
         (785 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0686 - 30900748-30902167,30903442-30904742                       31   0.79 
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           29   4.2  
06_01_0178 + 1386981-1387505                                           28   7.3  
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332...    28   9.7  

>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 31.5 bits (68), Expect = 0.79
 Identities = 19/70 (27%), Positives = 22/70 (31%)
 Frame = +3

Query: 345 AXSAXXPPXSPXPRSFXCGKPVXXPPPRGXNRFPXKXRGXPPXXTFXXKRXPXXGPXXPX 524
           A ++  PP  P P+      P   PP       P K    PP         P  GP  P 
Sbjct: 307 AVASPAPPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPP 366

Query: 525 XKRXXGLGGG 554
                G  GG
Sbjct: 367 PPPPGGKKGG 376


>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 21/74 (28%), Positives = 23/74 (31%)
 Frame = +3

Query: 333 AXLGAXSAXXPPXSPXPRSFXCGKPVXXPPPRGXNRFPXKXRGXPPXXTFXXKRXPXXGP 512
           A  GA +   PP    P +     P   P   G    P      PP       R P  GP
Sbjct: 312 AGAGAGTGAPPPPPAHPAAPAPPPPAPSPSAAGAGSGPPPP---PPPAAPAAPRPPGPGP 368

Query: 513 XXPXXKRXXGLGGG 554
             P      G GGG
Sbjct: 369 GPPPPPGAAGRGGG 382


>06_01_0178 + 1386981-1387505
          Length = 174

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = -3

Query: 759 RGXGXRGGXXARGGVFLXGGXXXXGG 682
           RG G RGG   RGG    GG    GG
Sbjct: 21  RGRGGRGGRGGRGGASGGGGGGGGGG 46


>01_01_0446 +
           3321832-3322232,3322398-3322455,3322810-3323748,
           3324504-3324654,3324740-3324818,3325826-3325934
          Length = 578

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 22/71 (30%), Positives = 26/71 (36%), Gaps = 1/71 (1%)
 Frame = -1

Query: 551 PPQTPXPFXXGXXGPXXGXPFGXKGXXRGXP-PXFXGKPVXPPWXGXGXRFXAXERXGXR 375
           PP  P P+  G  G     P    G   G P P   G    PP+ G G         G  
Sbjct: 357 PPPNP-PYSGGAPGGQGSLPPSYDGGYGGRPMPGGGGPGAPPPYHGGGG------GGGGG 409

Query: 374 GXRGGXSGXSA 342
           G  GG +G +A
Sbjct: 410 GGGGGYTGSAA 420


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,229,788
Number of Sequences: 37544
Number of extensions: 256758
Number of successful extensions: 574
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)