Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_I06
         (785 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    30   2.2  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    29   2.9  
U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical pr...    29   5.0  
U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical pr...    29   5.0  

>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 25/74 (33%), Positives = 27/74 (36%), Gaps = 10/74 (13%)
 Frame = +3

Query: 366 PXSPXPRSFXCGKPVXXPPP---RGX---NRFPXKXRGX----PPXXTFXXKRXPXXGPX 515
           P  P P  F  G     PPP   RG    + FP   RG     PP  +F   R    GP 
Sbjct: 739 PNKPPPPMFQQGFNAGAPPPPFGRGAGPMSSFPPPPRGGMHHMPPPPSFRGGRGGHGGPP 798

Query: 516 XPXXKRXXGLGGGF 557
            P   R  G G  F
Sbjct: 799 PPHFDRRGGGGPPF 812


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 24/89 (26%), Positives = 26/89 (29%)
 Frame = +3

Query: 363 PPXSPXPRSFXCGKPVXXPPPRGXNRFPXKXRGXPPXXTFXXKRXPXXGPXXPXXKRXXG 542
           PP  P       G P   PPP   +RF     G  P       R P  G   P   R   
Sbjct: 300 PPPPPGRTPGPPGMPGMPPPP-PPSRFGPPGMGGMPPPPPPGMRYP-GGMPPPPPPRYPS 357

Query: 543 LGGGFFXXXXXXXXXXXXXXPXXXPPPPP 629
            G G +                  PPPPP
Sbjct: 358 AGPGMYPPPPPSRPPAPPSGHGMIPPPPP 386


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 24/89 (26%), Positives = 26/89 (29%)
 Frame = +3

Query: 363 PPXSPXPRSFXCGKPVXXPPPRGXNRFPXKXRGXPPXXTFXXKRXPXXGPXXPXXKRXXG 542
           PP  P       G P   PPP   +RF     G  P       R P  G   P   R   
Sbjct: 310 PPPPPGRTPGPPGMPGMPPPP-PPSRFGPPGMGGMPPPPPPGMRYP-GGMPPPPPPRYPS 367

Query: 543 LGGGFFXXXXXXXXXXXXXXPXXXPPPPP 629
            G G +                  PPPPP
Sbjct: 368 AGPGMYPPPPPSRPPAPPSGHGMIPPPPP 396


>U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical
           protein R144.4a protein.
          Length = 360

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = +3

Query: 330 FAXLGAXS-AXXPPXSPXPRSFXCGKPVXXPPP 425
           F+  GA S A  PP  P P S    KP   PPP
Sbjct: 145 FSHHGATSSAPPPPPPPPPVSVPSSKPTPPPPP 177


>U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical
           protein R144.4b protein.
          Length = 362

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = +3

Query: 330 FAXLGAXS-AXXPPXSPXPRSFXCGKPVXXPPP 425
           F+  GA S A  PP  P P S    KP   PPP
Sbjct: 145 FSHHGATSSAPPPPPPPPPVSVPSSKPTPPPPP 177


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,796,730
Number of Sequences: 27780
Number of extensions: 197904
Number of successful extensions: 436
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)