Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_I02
(854 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_1006 + 13150394-13150450,13150787-13150899,13152538-131527... 151 9e-37
07_03_1599 - 28022196-28022218,28022355-28022408,28022545-280226... 146 3e-35
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 142 2e-34
03_02_0185 - 6239421-6239480,6239971-6240024,6240523-6240578,624... 128 6e-30
04_04_0863 + 28847761-28848009,28848108-28848131,28849388-288494... 45 9e-05
03_06_0167 - 32115770-32115886,32116388-32117102,32117178-321173... 35 0.095
03_06_0343 + 33274329-33274981,33275197-33276121 30 2.7
04_04_1273 - 32307273-32307569,32307659-32307791,32307874-323081... 29 4.7
01_01_0429 + 3254291-3254435,3254902-3255210,3255286-3256747,325... 29 6.2
01_06_1321 + 36280691-36281269 28 8.3
01_01_0892 + 7037384-7037795,7038447-7038962,7039507-7039593,703... 24 9.1
>03_02_1006 +
13150394-13150450,13150787-13150899,13152538-13152709,
13153791-13153878,13153971-13154072,13154197-13154292,
13154547-13154578,13154727-13154802,13155264-13155317,
13155431-13155453
Length = 270
Score = 151 bits (365), Expect = 9e-37
Identities = 67/137 (48%), Positives = 90/137 (65%)
Frame = +3
Query: 180 LEATSHSLRFKMGRFTFRGGITGLPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHKDHGHP 359
++ T H ++ G T G ++GL PG +GFH+H GD + GC+STG H+NP K+HG P
Sbjct: 132 VKGTIHFVQEGDGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTGPHYNPAGKEHGAP 191
Query: 360 NDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGQSDXPDS 539
D RH GDLGNV E+ + I +VD QI L+GP+ IIGRAVV+H DD G+ S
Sbjct: 192 EDETRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELS 251
Query: 540 RKTGXAGGRVXCGVLGI 590
+ TG AGGRV CG++G+
Sbjct: 252 KTTGNAGGRVACGIIGL 268
>07_03_1599 -
28022196-28022218,28022355-28022408,28022545-28022620,
28022727-28022758,28022921-28023016,28023105-28023206,
28023291-28023366
Length = 152
Score = 146 bits (353), Expect = 3e-35
Identities = 63/125 (50%), Positives = 83/125 (66%)
Frame = +3
Query: 216 GRFTFRGGITGLPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHKDHGHPNDVNRHVGDLGN 395
G + G ++GL PG +GFHVH GD + GC+STG HFNP K+HG P D NRH GDLGN
Sbjct: 26 GPTSVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPTGKEHGAPQDENRHAGDLGN 85
Query: 396 VVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGQSDXPDSRKTGXAGGRVXC 575
+ + + +++ D QI L+G H IIGRAVV+H DD G+ S+ TG AGGRV C
Sbjct: 86 ITAGADGVANVNVSDSQIPLTGAHSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 145
Query: 576 GVLGI 590
G++G+
Sbjct: 146 GIIGL 150
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 142 bits (345), Expect = 2e-34
Identities = 68/158 (43%), Positives = 92/158 (58%)
Frame = +3
Query: 117 RRLIMASPRRPAPLPFYPQKRLEATSHSLRFKMGRFTFRGGITGLPPGEYGFHVHEKGDL 296
R L++A + A ++E + G T +TGL PG +GFH+HE GD
Sbjct: 43 RALVVADATKKAVAVLKGTSQVEGVVTLTQDDQGPTTVNVRVTGLTPGLHGFHLHEFGDT 102
Query: 297 SGGCLSTGSHFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGII 476
+ GC+STG HFNP + HG P D RH GDLGN+V + + +VD QI LSGP+ ++
Sbjct: 103 TNGCISTGPHFNPNNLTHGAPEDEVRHAGDLGNIVANAEGVAEATIVDKQIPLSGPNSVV 162
Query: 477 GRAVVLHEKADDYGQSDXPDSRKTGXAGGRVXCGVLGI 590
GRA V+HE DD G+ S TG AGGR+ CGV+G+
Sbjct: 163 GRAFVVHELEDDLGKGGHELSLSTGNAGGRLACGVVGL 200
>03_02_0185 -
6239421-6239480,6239971-6240024,6240523-6240578,
6241108-6241183,6241276-6241307,6241421-6241516,
6242498-6242599,6242728-6242833
Length = 193
Score = 128 bits (309), Expect = 6e-30
Identities = 56/97 (57%), Positives = 72/97 (74%)
Frame = +3
Query: 231 RGGITGLPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHKDHGHPNDVNRHVGDLGNVVFDE 410
RG +TGL PG +GFH+H GD + GC STG HFNP +K HG P+D RHVGDLGN+V ++
Sbjct: 41 RGRVTGLAPGLHGFHIHSFGDTTNGCNSTGPHFNPHNKSHGAPSDDERHVGDLGNIVANK 100
Query: 411 NHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGQ 521
+ + I + D QISLSGPH I+GRAVV+H +DD G+
Sbjct: 101 DGVADIFIKDLQISLSGPHSILGRAVVVHADSDDLGR 137
>04_04_0863 +
28847761-28848009,28848108-28848131,28849388-28849460,
28849550-28849684,28850191-28850411,28851747-28851983
Length = 312
Score = 44.8 bits (101), Expect = 9e-05
Identities = 27/89 (30%), Positives = 49/89 (55%)
Frame = +3
Query: 243 TGLPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYS 422
+GL PG++G+ ++E GDL+ G STG +NP D+ N+ +GDLG + E +
Sbjct: 197 SGLSPGKHGWSINEFGDLTRGAESTGKVYNP--SDYRS----NKPLGDLGTLEAGEKGEA 250
Query: 423 RIDLVDDQISLSGPHGIIGRAVVLHEKAD 509
+ +++ + +IGR++ L+ D
Sbjct: 251 QFSASKEKLKVV---DLIGRSIALYATED 276
>03_06_0167 -
32115770-32115886,32116388-32117102,32117178-32117383,
32118094-32118138,32119047-32119109,32119726-32119749,
32120673-32120772,32120814-32120907,32121036-32121074,
32121605-32121668
Length = 488
Score = 34.7 bits (76), Expect = 0.095
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 225 TFRGGITGLPPGEYGFHVHEKGDLSGGCLSTG 320
T + ++GL P +GFHVH G + GC+ G
Sbjct: 38 TVKENVSGLKPVLHGFHVHALGGTTNGCMRNG 69
>03_06_0343 + 33274329-33274981,33275197-33276121
Length = 525
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = +3
Query: 45 FSDGSQRENKNACFNSH--SWLRSLWRRLIMASPRRPAPLPFYPQKRLEATSHSLRFKMG 218
+ D + + C SH S++ SLW ++ P+ L P+K+ E FK G
Sbjct: 214 WGDDGHAKTEVTCVRSHFRSYMCSLWTEVVFKHPKTFETLAMDPEKKREIIDDLDMFKNG 273
Query: 219 R 221
+
Sbjct: 274 K 274
>04_04_1273 -
32307273-32307569,32307659-32307791,32307874-32308105,
32308220-32308436,32308594-32308718,32309416-32310757
Length = 781
Score = 29.1 bits (62), Expect = 4.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 173 LWIERQWRGTAW*SHDEPSP 114
LW ++W TAW S D+PSP
Sbjct: 173 LWSGQEWFITAWRSADDPSP 192
>01_01_0429 +
3254291-3254435,3254902-3255210,3255286-3256747,
3256950-3257577
Length = 847
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -3
Query: 537 SPXGHSGRNHQLSRGAPPLCR*CRADPIARSGRLPGRSCCSGSRQRPR 394
SP G G L + PPL R C + + +GR+ G++ G+ RPR
Sbjct: 797 SPGGWPGEIPALVQTLPPLTRRCTS---SIAGRVAGKAAGGGTWPRPR 841
>01_06_1321 + 36280691-36281269
Length = 192
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +3
Query: 624 YLIKYICIFTXPPXXPXXXPPPPPVXXXXXXPLY 725
YL + T PP P PPPPP+ P +
Sbjct: 133 YLKRTRVAATPPPSPPPPPPPPPPLPPAMYVPCF 166
>01_01_0892 +
7037384-7037795,7038447-7038962,7039507-7039593,
7039698-7039768,7040148-7040224,7040380-7040527,
7040973-7041134,7041374-7041694
Length = 597
Score = 23.8 bits (49), Expect(2) = 9.1
Identities = 14/55 (25%), Positives = 23/55 (41%)
Frame = +3
Query: 531 PDSRKTGXAGGRVXCGVLGIL*IYKFLI*LSYLIKYICIFTXPPXXPXXXPPPPP 695
P + + G V+GI+ + ++ L I +C+F PPPPP
Sbjct: 62 PAAAAAASSSGLTTPVVVGIV-VGGLVVLLLVTILLVCLFKKKKRHHHHHPPPPP 115
Score = 22.6 bits (46), Expect(2) = 9.1
Identities = 9/31 (29%), Positives = 12/31 (38%)
Frame = +3
Query: 669 PXXXPPPPPVXXXXXXPLYRGXXGSXPAXXP 761
P PPPPP +Y+ + P P
Sbjct: 127 PPPPPPPPPFKGDHYGGVYQNWQQNGPPPPP 157
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,441,216
Number of Sequences: 37544
Number of extensions: 482971
Number of successful extensions: 2701
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2464
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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