Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_I02
         (854 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB190513-1|BAD51397.1|  221|Caenorhabditis elegans superoxide di...   141   7e-34
Z27080-4|CAB61015.1|  176|Caenorhabditis elegans Hypothetical pr...   139   3e-33
AB003924-1|BAA28262.1|  176|Caenorhabditis elegans SOD4-1 protein.    139   3e-33
X77020-1|CAA54318.1|  158|Caenorhabditis elegans copper/zinc sup...   124   1e-28
L20135-1|AAA28147.1|  158|Caenorhabditis elegans superoxide dism...   124   1e-28
AC006608-8|AAV34795.1|  158|Caenorhabditis elegans Sod (superoxi...   124   1e-28
AC006608-7|AAF39759.1|  180|Caenorhabditis elegans Sod (superoxi...   124   1e-28
U42833-3|AAA83577.1|  178|Caenorhabditis elegans Sod (superoxide...   117   9e-27

>AB190513-1|BAD51397.1|  221|Caenorhabditis elegans superoxide
           dismutase protein.
          Length = 221

 Score =  141 bits (341), Expect = 7e-34
 Identities = 60/120 (50%), Positives = 80/120 (66%)
 Frame = +3

Query: 234 GGITGLPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHKDHGHPNDVNRHVGDLGNVVFDEN 413
           G ++GL  G++GFH+HEKGD   GCLS G H+NP    HG P+D NRH+GDLGN+    +
Sbjct: 57  GSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHGAPDDSNRHIGDLGNIESPAS 116

Query: 414 HYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGQSDXPDSRKTGXAGGRVXCGVLGIL 593
             + I + D   SLSG + IIGR+VV+HEK DD G+     S+ TG AG R+ CG +GI+
Sbjct: 117 GDTLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRGTSDQSKTTGNAGSRLACGTIGIV 176


>Z27080-4|CAB61015.1|  176|Caenorhabditis elegans Hypothetical
           protein F55H2.1 protein.
          Length = 176

 Score =  139 bits (336), Expect = 3e-33
 Identities = 59/118 (50%), Positives = 78/118 (66%)
 Frame = +3

Query: 234 GGITGLPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHKDHGHPNDVNRHVGDLGNVVFDEN 413
           G ++GL  G++GFH+HEKGD   GCLS G H+NP    HG P+D NRH+GDLGN+    +
Sbjct: 57  GSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHGAPDDSNRHIGDLGNIESPAS 116

Query: 414 HYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGQSDXPDSRKTGXAGGRVXCGVLG 587
             + I + D   SLSG + IIGR+VV+HEK DD G+     S+ TG AG R+ CG +G
Sbjct: 117 GDTLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRGTSDQSKTTGNAGSRLACGTIG 174


>AB003924-1|BAA28262.1|  176|Caenorhabditis elegans SOD4-1 protein.
          Length = 176

 Score =  139 bits (336), Expect = 3e-33
 Identities = 59/118 (50%), Positives = 78/118 (66%)
 Frame = +3

Query: 234 GGITGLPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHKDHGHPNDVNRHVGDLGNVVFDEN 413
           G ++GL  G++GFH+HEKGD   GCLS G H+NP    HG P+D NRH+GDLGN+    +
Sbjct: 57  GSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHGAPDDSNRHIGDLGNIESPAS 116

Query: 414 HYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGQSDXPDSRKTGXAGGRVXCGVLG 587
             + I + D   SLSG + IIGR+VV+HEK DD G+     S+ TG AG R+ CG +G
Sbjct: 117 GDTLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRGTSDQSKTTGNAGSRLACGTIG 174


>X77020-1|CAA54318.1|  158|Caenorhabditis elegans copper/zinc
           superoxide dismutase protein.
          Length = 158

 Score =  124 bits (298), Expect = 1e-28
 Identities = 57/122 (46%), Positives = 77/122 (63%), Gaps = 3/122 (2%)
 Frame = +3

Query: 234 GGITGLPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHKDHGHPNDVNRHVGDLGNVVFDEN 413
           G I GL PG +GFHVH+ GD + GC+S G HFNP  K HG P    RHVGDLGNV    +
Sbjct: 33  GEIKGLTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHGGPKSEIRHVGDLGNVEAGAD 92

Query: 414 HYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGQ---SDXPDSRKTGXAGGRVXCGVL 584
             ++I L D  ++L GP+ ++GR++V+H   DD G+       +S+KTG AG R  CGV+
Sbjct: 93  GVAKIKLTDTLVTLYGPNTVVGRSMVVHAGQDDLGEGVGDKAEESKKTGNAGARAACGVI 152

Query: 585 GI 590
            +
Sbjct: 153 AL 154


>L20135-1|AAA28147.1|  158|Caenorhabditis elegans superoxide
           dismutase protein.
          Length = 158

 Score =  124 bits (298), Expect = 1e-28
 Identities = 57/122 (46%), Positives = 77/122 (63%), Gaps = 3/122 (2%)
 Frame = +3

Query: 234 GGITGLPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHKDHGHPNDVNRHVGDLGNVVFDEN 413
           G I GL PG +GFHVH+ GD + GC+S G HFNP  K HG P    RHVGDLGNV    +
Sbjct: 33  GEIKGLTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHGGPKSEIRHVGDLGNVEAGAD 92

Query: 414 HYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGQ---SDXPDSRKTGXAGGRVXCGVL 584
             ++I L D  ++L GP+ ++GR++V+H   DD G+       +S+KTG AG R  CGV+
Sbjct: 93  GVAKIKLTDTLVTLYGPNTVVGRSMVVHAGQDDLGEGVGDKAEESKKTGNAGARAACGVI 152

Query: 585 GI 590
            +
Sbjct: 153 AL 154


>AC006608-8|AAV34795.1|  158|Caenorhabditis elegans Sod (superoxide
           dismutase) protein1, isoform b protein.
          Length = 158

 Score =  124 bits (298), Expect = 1e-28
 Identities = 57/122 (46%), Positives = 77/122 (63%), Gaps = 3/122 (2%)
 Frame = +3

Query: 234 GGITGLPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHKDHGHPNDVNRHVGDLGNVVFDEN 413
           G I GL PG +GFHVH+ GD + GC+S G HFNP  K HG P    RHVGDLGNV    +
Sbjct: 33  GEIKGLTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHGGPKSEIRHVGDLGNVEAGAD 92

Query: 414 HYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGQ---SDXPDSRKTGXAGGRVXCGVL 584
             ++I L D  ++L GP+ ++GR++V+H   DD G+       +S+KTG AG R  CGV+
Sbjct: 93  GVAKIKLTDTLVTLYGPNTVVGRSMVVHAGQDDLGEGVGDKAEESKKTGNAGARAACGVI 152

Query: 585 GI 590
            +
Sbjct: 153 AL 154


>AC006608-7|AAF39759.1|  180|Caenorhabditis elegans Sod (superoxide
           dismutase) protein1, isoform a protein.
          Length = 180

 Score =  124 bits (298), Expect = 1e-28
 Identities = 57/122 (46%), Positives = 77/122 (63%), Gaps = 3/122 (2%)
 Frame = +3

Query: 234 GGITGLPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHKDHGHPNDVNRHVGDLGNVVFDEN 413
           G I GL PG +GFHVH+ GD + GC+S G HFNP  K HG P    RHVGDLGNV    +
Sbjct: 55  GEIKGLTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHGGPKSEIRHVGDLGNVEAGAD 114

Query: 414 HYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGQ---SDXPDSRKTGXAGGRVXCGVL 584
             ++I L D  ++L GP+ ++GR++V+H   DD G+       +S+KTG AG R  CGV+
Sbjct: 115 GVAKIKLTDTLVTLYGPNTVVGRSMVVHAGQDDLGEGVGDKAEESKKTGNAGARAACGVI 174

Query: 585 GI 590
            +
Sbjct: 175 AL 176


>U42833-3|AAA83577.1|  178|Caenorhabditis elegans Sod (superoxide
           dismutase) protein5 protein.
          Length = 178

 Score =  117 bits (282), Expect = 9e-27
 Identities = 57/124 (45%), Positives = 75/124 (60%), Gaps = 3/124 (2%)
 Frame = +3

Query: 228 FRGGITGLPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHKDHGHPNDVNRHVGDLGNVVFD 407
           F G I GL PG +GFH+H+ GD + GC S G HFNP   +HG  + V RHVGDLGNV   
Sbjct: 51  FEGEIKGLSPGLHGFHIHQYGDSTDGCTSAGPHFNPCKMNHGGRDSVVRHVGDLGNVEAG 110

Query: 408 ENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGQ---SDXPDSRKTGXAGGRVXCG 578
            +  ++I   D  +SL G + +IGR++V+H   DD GQ       +S KTG AG R  CG
Sbjct: 111 ADGVAKIKFSDKVVSLFGANTVIGRSMVVHVDRDDLGQGIDDKAEESLKTGNAGARAACG 170

Query: 579 VLGI 590
           V+ +
Sbjct: 171 VIAL 174


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,588,345
Number of Sequences: 27780
Number of extensions: 346226
Number of successful extensions: 1273
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1199
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)