Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_H24
         (924 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    23   3.5  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   8.6  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   8.6  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 23.4 bits (48), Expect(2) = 3.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 887 SPPXPPPPXP 916
           +PP PPPP P
Sbjct: 188 NPPPPPPPPP 197



 Score = 21.8 bits (44), Expect(2) = 3.5
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +2

Query: 872 PXQLXSPPXPPPP 910
           P     PP PPPP
Sbjct: 184 PSDYNPPPPPPPP 196


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +2

Query: 863 PPXPXQLXSPPXPPPPXP 916
           PP P     P  PPPP P
Sbjct: 12  PPPPPGFEPPSQPPPPPP 29


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +2

Query: 863 PPXPXQLXSPPXPPPP 910
           PP P     PP PPPP
Sbjct: 753 PPAPIMGGPPPPPPPP 768



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 863 PPXPXQLXSPPXPPPPXP 916
           PP P    + P PPPP P
Sbjct: 765 PPPPGVAGAGPPPPPPPP 782


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,380,872
Number of Sequences: 5004
Number of extensions: 35399
Number of successful extensions: 129
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)