Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_H22
         (870 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039047-11|AAB94230.1|  354|Caenorhabditis elegans Prion-like-(...    29   4.3  
AF036699-4|AAB88358.1|  281|Caenorhabditis elegans Collagen prot...    29   4.3  
U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical pr...    28   7.5  
AL032634-3|CAE45092.1|  412|Caenorhabditis elegans Hypothetical ...    28   7.5  

>AF039047-11|AAB94230.1|  354|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 51
           protein.
          Length = 354

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = +2

Query: 476 ATGSGVWDLDKNTRLSAGGMVSKEFGHRRPDVGVQAEFRHDW*SRRSHQDIIDLNNNLLP 655
           A G+G+ +L K+        + + F     DV V ++ R +W  + +    +DL +N  P
Sbjct: 2   AHGNGIAELYKSVMADVIANMKEAFLDENIDVDVLSQLRKEWEDKVNSSGCVDLESNAPP 61


>AF036699-4|AAB88358.1|  281|Caenorhabditis elegans Collagen protein
           104 protein.
          Length = 281

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = -2

Query: 428 LPHSYWPSL--DVHRSL-YCPPAGPRTPGAVGLPG 333
           LP +Y PS+  D H+    CPP  P  PG  G PG
Sbjct: 118 LPGNY-PSINMDAHQQCRMCPPGAPGFPGPAGPPG 151


>U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical protein
            B0207.5 protein.
          Length = 3279

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 196  DTRVTSPGTNKWGEGRSSARWAKMMMGFLVKP 291
            +TR  + GTNK  +GR+  R   M +G ++KP
Sbjct: 3195 ETRTRNKGTNKRRDGRNDGR--NMNLGSIIKP 3224


>AL032634-3|CAE45092.1|  412|Caenorhabditis elegans Hypothetical
           protein Y39G8C.4 protein.
          Length = 412

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
 Frame = -2

Query: 401 DVHRSLY---CPPAGPRTPGAVGLPGQFAA 321
           D  R  Y   CP   P +PG  GLPG+ AA
Sbjct: 89  DTDRKCYGNPCPRGPPGSPGVPGLPGEDAA 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,342,776
Number of Sequences: 27780
Number of extensions: 404769
Number of successful extensions: 2049
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2038
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)