Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_H21
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1 |S...    28   1.5  
SPAC17G8.05 |med20||mediator complex subunit Med20|Schizosacchar...    26   8.0  
SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces ...    26   8.0  

>SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 445

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -3

Query: 614 NTXNFYAIGNVKKLALSTQFCFEEIESKSLAEVSQWNLAAANIRQGSPWQWF 459
           NT   YA   + K  +ST+  FE+ E   L ++   N+   N+   S  Q+F
Sbjct: 181 NTGGQYACKIIDKKKISTKRFFEDHEMTILRKLDHPNIIKVNMEYNSETQFF 232


>SPAC17G8.05 |med20||mediator complex subunit
           Med20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 180

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -3

Query: 530 SLAEVSQWNLAAANIRQGSPWQ--WFFQPYPGIEAV 429
           S+ EV  + +A AN+ Q S W+   F   Y G E+V
Sbjct: 88  SIYEVGSFKVAIANVLQKSVWKGILFHVTYDGTESV 123


>SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 539

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
 Frame = -3

Query: 551 FEEIESKSLAEVSQWNLAAANIRQGSPWQWFFQPYPGIEAVT--------FVNFLSAFRC 396
           F +I + SLA+ S    + + +    P    ++  P I  V          + FL++F C
Sbjct: 333 FSQISNDSLAKASSVATSMSQMGAAVPTTGLWKRQPRILLVEDDELSRRMTIKFLTSFDC 392

Query: 395 LSDVVSQEVGALNVA 351
             DV    +GA+N A
Sbjct: 393 QVDVAVDGIGAVNKA 407


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,284,538
Number of Sequences: 5004
Number of extensions: 44060
Number of successful extensions: 132
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)