Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_H19
         (870 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0327 - 33158131-33158315,33158586-33158639,33159149-331591...    31   0.91 
01_06_1664 - 38984545-38984615,38984706-38984802,38985362-389855...    29   4.8  

>03_06_0327 -
           33158131-33158315,33158586-33158639,33159149-33159180,
           33159275-33159369,33159466-33159539,33159643-33159778,
           33159874-33159937,33160017-33160079,33160160-33160299,
           33160487-33160627,33160747-33160868,33160947-33161112,
           33161194-33161313,33161580-33161651,33161787-33161843,
           33162036-33162152,33162231-33162369,33162794-33162900,
           33162972-33163081,33163172-33163305,33163397-33163546,
           33163635-33163840,33166123-33166818
          Length = 1059

 Score = 31.5 bits (68), Expect = 0.91
 Identities = 17/55 (30%), Positives = 21/55 (38%)
 Frame = +3

Query: 603 PGXGXXPXGGXFLGPPTXKXXPXXVWXPPPXXXWPGKXXXFWXKXGXPXALLGXP 767
           PG G    GG   G P  +     VW PP     PG     + + G P  + G P
Sbjct: 26  PGRGGGGGGG---GAPPYRPASGFVWPPPGMTPRPGPPQPQYPRPGPPAVVYGAP 77


>01_06_1664 -
           38984545-38984615,38984706-38984802,38985362-38985523,
           38985736-38985825,38986125-38986226,38986373-38986446,
           38986587-38986615,38986766-38986989
          Length = 282

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = -2

Query: 254 CSCPFFQFS*RSSTWAREQHWSCSKPAPERRRRIGSLRNSL*VYLNSNADVKTSSGAVLI 75
           CS     FS +   WA E+H +CS P    +  +     +L +Y   N     +SG + +
Sbjct: 126 CSSSSTCFSGKGPFWAHEKHGTCSSPVV--KDELEYFTTALDLYFKYNVTEMLASGGIHV 183

Query: 74  T 72
           +
Sbjct: 184 S 184


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,016,420
Number of Sequences: 37544
Number of extensions: 360507
Number of successful extensions: 711
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)