Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_H17
         (971 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.26 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.2  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   5.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   5.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 0.26
 Identities = 12/36 (33%), Positives = 12/36 (33%)
 Frame = +2

Query: 482 PXGGGPXPXPXPXHXPPPXXGGGGGXXXXPPPPPXP 589
           P  G P P P P   P     G        PPP  P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGP 51



 Score = 25.8 bits (54), Expect = 0.59
 Identities = 11/36 (30%), Positives = 13/36 (36%)
 Frame = +1

Query: 574 PPPXPXXHPXXXGXRAGAGXXXXPPPPXAGXPXPPP 681
           P P P  H      + G+       PP  G P  PP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 25.4 bits (53), Expect = 0.78
 Identities = 14/41 (34%), Positives = 14/41 (34%)
 Frame = +2

Query: 452 PPPPPPPFXXPXGGGPXPXPXPXHXPPPXXGGGGGXXXXPP 574
           P P P P   P        P P   PPP     GG    PP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPP-----GGPPGAPP 56



 Score = 22.6 bits (46), Expect = 5.5
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 649 PPXAGXPXPPPP 684
           PP AG P PP P
Sbjct: 410 PPSAGAPMPPIP 421


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 452  PPPPPPP 472
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.4
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 452  PPPPPPP 472
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 21.8 bits (44), Expect(2) = 1.1
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 437  AXKXXPPPPPPP 472
            A +   PPPPPP
Sbjct: 1349 AWRQQQPPPPPP 1360



 Score = 21.8 bits (44), Expect = 9.6
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 434  RAXKXXPPPPPP 469
            R  +  PPPPPP
Sbjct: 1351 RQQQPPPPPPPP 1362



 Score = 21.0 bits (42), Expect(2) = 1.1
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +2

Query: 569  PPPPPXPXNT 598
            PPPPP P ++
Sbjct: 1355 PPPPPPPPSS 1364


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 4.2
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 443 KXXPPPPPPPFXXP 484
           K  PPPPPP    P
Sbjct: 340 KPAPPPPPPSSSGP 353



 Score = 23.0 bits (47), Expect = 4.2
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +2

Query: 263 APPPPPPA 286
           APPPPPP+
Sbjct: 342 APPPPPPS 349



 Score = 22.6 bits (46), Expect = 5.5
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 452 PPPPPPPFXXPXGGGP 499
           PP P PP   P   GP
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 22.6 bits (46), Expect = 5.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 650 PXXPGPPXPPP 682
           P  P PP PPP
Sbjct: 338 PPKPAPPPPPP 348


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -3

Query: 552 PPPPXXGGGXW 520
           PPPP   GG W
Sbjct: 376 PPPPPIRGGEW 386



 Score = 22.2 bits (45), Expect = 7.3
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 555 PPPPPXXGG 529
           PPPPP  GG
Sbjct: 376 PPPPPIRGG 384


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 652  PXAGXPXPPPP 684
            P +G P PPPP
Sbjct: 1852 PVSGSPEPPPP 1862


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,221
Number of Sequences: 438
Number of extensions: 9826
Number of successful extensions: 39
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32048835
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)