Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_H15
(868 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 200 2e-52
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 138 1e-33
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 128 1e-30
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 116 6e-27
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 107 2e-24
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 104 2e-23
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 101 1e-22
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 90 3e-19
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 90 3e-19
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 87 4e-18
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 83 4e-17
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 83 7e-17
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 79 6e-16
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 77 4e-15
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 74 2e-14
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 74 3e-14
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 72 9e-14
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 68 2e-12
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 66 6e-12
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 64 3e-11
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 60 4e-10
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 60 5e-10
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 60 5e-10
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 59 7e-10
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 55 2e-08
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 53 6e-08
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 43 5e-05
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 42 2e-04
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 41 2e-04
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 40 3e-04
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 34 0.030
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 29 0.86
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 28 2.0
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 200 bits (488), Expect = 2e-52
Identities = 87/167 (52%), Positives = 123/167 (73%)
Frame = +3
Query: 51 GSLQLAANHNILQIIDVCXEYEKETKLSTLLKEIMAEKENKTIIFIETKRRVDDITRKMK 230
GSL LAA+HNI QI++V +K +L ++E++ +++NK +IF TKR DDITR ++
Sbjct: 331 GSLDLAASHNIKQIVEVVDNADKRARLGKDIEEVLKDRDNKVLIFTGTKRVADDITRFLR 390
Query: 231 RDGWPAVCIHGDXSQNERDWVLQDFRSGKAPILVATDVAARGLDVDDVKFVINFDYPSHS 410
+DGWPA+ IHGD +Q+ERDWVL +FR+GK+PI+VATDVA+RG+DV + V N+D+P ++
Sbjct: 391 QDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNT 450
Query: 411 EDYVHRIGXXGXXNKTGTAYTFFTPSNAAKASDLISVLXXAXPSCNP 551
EDYVHRIG G GTAYT+FT NA +A +L+S+L A +P
Sbjct: 451 EDYVHRIGRTGRAGAKGTAYTYFTSDNAKQARELVSILSEAKQDIDP 497
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 138 bits (333), Expect = 1e-33
Identities = 76/169 (44%), Positives = 105/169 (62%), Gaps = 3/169 (1%)
Frame = +3
Query: 36 LKDFFGSLQLAANHNILQIIDVCXE-YEKETKLSTLLKEIMAE--KENKTIIFIETKRRV 206
+K GS +LAA+ NI QI+++ + KE L LL++ ++ K++K +IF+ K+
Sbjct: 371 VKITIGSDELAASQNITQIVEILDDPRSKERMLDNLLRKHLSSGGKDDKILIFVLYKKEA 430
Query: 207 DDITRKMKRDGWPAVCIHGDXSQNERDWVLQDFRSGKAPILVATDVAARGLDVDDVKFVI 386
+ + R + V IHGD SQ R L DF+SGK P+LVATDVAARGLD+ V+ VI
Sbjct: 431 ARVEGTLARK-YNVVGIHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVI 489
Query: 387 NFDYPSHSEDYVHRIGXXGXXNKTGTAYTFFTPSNAAKASDLISVLXXA 533
N +P EDYVHRIG G N GTA TFFTP + + A +L++VL A
Sbjct: 490 NVTFPLTIEDYVHRIGRTGRANTKGTAITFFTPQDKSHAGELVNVLRQA 538
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 128 bits (309), Expect = 1e-30
Identities = 67/160 (41%), Positives = 93/160 (58%)
Frame = +3
Query: 66 AANHNILQIIDVCXEYEKETKLSTLLKEIMAEKENKTIIFIETKRRVDDITRKMKRDGWP 245
+ + NI Q + + EK + L +L + E T+IF+ETKR D +T + +P
Sbjct: 399 STSENITQKVVHVEDSEKRSYLLDILHTL--PPEGLTLIFVETKRMADTLTDYLLNSNFP 456
Query: 246 AVCIHGDXSQNERDWVLQDFRSGKAPILVATDVAARGLDVDDVKFVINFDYPSHSEDYVH 425
A IHGD +Q ER+ L+ FRSG+ I+VAT VA+RGLD+ +V VIN+D P+ +DYVH
Sbjct: 457 ATSIHGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVH 516
Query: 426 RIGXXGXXNKTGTAYTFFTPSNAAKASDLISVLXXAXPSC 545
RIG G TG A FF +N A +LI +L A C
Sbjct: 517 RIGRTGRAGNTGQAVAFFNRNNKGIAKELIELLQEANQEC 556
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 116 bits (278), Expect = 6e-27
Identities = 54/147 (36%), Positives = 87/147 (59%), Gaps = 1/147 (0%)
Frame = +3
Query: 87 QIIDVCXEYEKETKLSTLLKEIMAEK-ENKTIIFIETKRRVDDITRKMKRDGWPAVCIHG 263
QI++V E K ++L LL E+ + + +T++F++ + D + + + G+ + IHG
Sbjct: 641 QIVEVRPEESKFSRLLELLGELYNNQLDVRTLVFVDRQESADALLSDLMKRGYTSNSIHG 700
Query: 264 DXSQNERDWVLQDFRSGKAPILVATDVAARGLDVDDVKFVINFDYPSHSEDYVHRIGXXG 443
Q++RD + D+++G +L+AT V ARGLDV ++ V+N+D P+H EDYVHR+G G
Sbjct: 701 GKDQHDRDSTISDYKAGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTG 760
Query: 444 XXNKTGTAYTFFTPSNAAKASDLISVL 524
TG A TF TP A D+ L
Sbjct: 761 RAGHTGVAVTFITPEQEKYAVDIAKAL 787
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 107 bits (257), Expect = 2e-24
Identities = 49/133 (36%), Positives = 76/133 (57%)
Frame = +3
Query: 114 EKETKLSTLLKEIMAEKENKTIIFIETKRRVDDITRKMKRDGWPAVCIHGDXSQNERDWV 293
++E K TL + +IF ++R+VD +T KM+ + +HG+ Q ERD +
Sbjct: 243 KEEWKFDTLCDLYDTLTITQAVIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAI 302
Query: 294 LQDFRSGKAPILVATDVAARGLDVDDVKFVINFDYPSHSEDYVHRIGXXGXXNKTGTAYT 473
+QDFR G + +L+ TD+ ARG+DV V VIN+D P++ E+Y+HRIG G + G A
Sbjct: 303 MQDFRQGNSRVLICTDIWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAIN 362
Query: 474 FFTPSNAAKASDL 512
F T + D+
Sbjct: 363 FVTNEDVRILRDI 375
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 104 bits (249), Expect = 2e-23
Identities = 47/112 (41%), Positives = 68/112 (60%)
Frame = +3
Query: 177 IIFIETKRRVDDITRKMKRDGWPAVCIHGDXSQNERDWVLQDFRSGKAPILVATDVAARG 356
IIF+ KR ++ I +++ GW AV +HG SQ +R+ ++ R+ A ILVATD+A RG
Sbjct: 520 IIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRNKTADILVATDIAGRG 579
Query: 357 LDVDDVKFVINFDYPSHSEDYVHRIGXXGXXNKTGTAYTFFTPSNAAKASDL 512
+D+ +V V+N++ EDY HRIG G K+GTA TF P + DL
Sbjct: 580 IDIPNVSLVLNYNMAKSIEDYTHRIGRTGRAGKSGTAITFLGPEDTDVYYDL 631
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 101 bits (243), Expect = 1e-22
Identities = 46/123 (37%), Positives = 73/123 (59%)
Frame = +3
Query: 114 EKETKLSTLLKEIMAEKENKTIIFIETKRRVDDITRKMKRDGWPAVCIHGDXSQNERDWV 293
++E KL TL + +IF T+R+VD +T ++ + +HGD Q +RD +
Sbjct: 241 KEEWKLDTLCDLYETVTVTQAVIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDTL 300
Query: 294 LQDFRSGKAPILVATDVAARGLDVDDVKFVINFDYPSHSEDYVHRIGXXGXXNKTGTAYT 473
+ +FR+G + IL+ TD+ ARG+DV V VIN+D P++ E+Y+HRIG G + G +
Sbjct: 301 MHEFRTGSSRILITTDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVSIN 360
Query: 474 FFT 482
F T
Sbjct: 361 FVT 363
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 90.2 bits (214), Expect = 3e-19
Identities = 47/147 (31%), Positives = 77/147 (52%)
Frame = +3
Query: 75 HNILQIIDVCXEYEKETKLSTLLKEIMAEKENKTIIFIETKRRVDDITRKMKRDGWPAVC 254
H + Q E K K++ LL + + N+ +IF+++ R +++ R ++ +P++C
Sbjct: 268 HGLQQHYVKLEEKAKNRKINDLLDSL---EFNQVVIFVKSVSRANELDRLLRECNFPSIC 324
Query: 255 IHGDXSQNERDWVLQDFRSGKAPILVATDVAARGLDVDDVKFVINFDYPSHSEDYVHRIG 434
IHG Q ER + F+ I VATDV RG+D++ V VIN+D P + Y+HR+G
Sbjct: 325 IHGGLPQEERIKRYKAFKDFDKRICVATDVFGRGIDIERVNIVINYDMPDSPDSYLHRVG 384
Query: 435 XXGXXNKTGTAYTFFTPSNAAKASDLI 515
G G A TF + ++ D I
Sbjct: 385 RAGRFGTKGLAITFSSSEEDSQILDKI 411
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 90.2 bits (214), Expect = 3e-19
Identities = 46/123 (37%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Frame = +3
Query: 120 ETKLSTLLKEIMAEKENK--TIIFIETKRRVDDITRKMKRDGWPAVCIHGDXSQNERDWV 293
+T +L+++++ E K +IF++ R + ++ D IHG+ Q +R+
Sbjct: 271 DTSKIVILRQMISNGELKPRVVIFVQDIERAKALYTELLFDEIHVGVIHGELPQAKREEA 330
Query: 294 LQDFRSGKAPILVATDVAARGLDVDDVKFVINFDYPSHSEDYVHRIGXXGXXNKTGTAYT 473
L FR G+ +L+ATD+ ARG+D VK VINFD+P Y+HRIG G TG A T
Sbjct: 331 LAKFRKGEIWVLIATDLLARGIDFHGVKMVINFDFPQSVHSYIHRIGRTGRAGNTGQAVT 390
Query: 474 FFT 482
FFT
Sbjct: 391 FFT 393
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 86.6 bits (205), Expect = 4e-18
Identities = 50/160 (31%), Positives = 83/160 (51%)
Frame = +3
Query: 33 ILKDFFGSLQLAANHNILQIIDVCXEYEKETKLSTLLKEIMAEKENKTIIFIETKRRVDD 212
IL+D L L N +I +V +++ L LK + + T++F+ TK V+
Sbjct: 303 ILQDII-KLPLKDNVRPREIGNVNNPKKRKRALELALKGSESGSPDSTLVFVPTKHHVEY 361
Query: 213 ITRKMKRDGWPAVCIHGDXSQNERDWVLQDFRSGKAPILVATDVAARGLDVDDVKFVINF 392
++ + + G+ I+G Q R + +FR GK +LV TDVA+RG+D+ + VIN+
Sbjct: 362 VSELLVQAGYSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTDVASRGIDIPLLANVINY 421
Query: 393 DYPSHSEDYVHRIGXXGXXNKTGTAYTFFTPSNAAKASDL 512
D+P + +VHR+G +TG AY+ +A DL
Sbjct: 422 DFPPQPKVFVHRVGRTARAGRTGWAYSLVRAEDAGYLLDL 461
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 83.4 bits (197), Expect = 4e-17
Identities = 46/122 (37%), Positives = 65/122 (53%)
Frame = +3
Query: 117 KETKLSTLLKEIMAEKENKTIIFIETKRRVDDITRKMKRDGWPAVCIHGDXSQNERDWVL 296
K+T L L+ E+ N IIF T + ++ G+ A+ +HG SQ+ R L
Sbjct: 272 KDTYLVYLVNELAG---NSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGAL 328
Query: 297 QDFRSGKAPILVATDVAARGLDVDDVKFVINFDYPSHSEDYVHRIGXXGXXNKTGTAYTF 476
F+SG LVATDVAARGLD+ V VIN+D P+ S+ Y+HR+G + G +
Sbjct: 329 NKFKSGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIAL 388
Query: 477 FT 482
T
Sbjct: 389 VT 390
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 82.6 bits (195), Expect = 7e-17
Identities = 43/125 (34%), Positives = 69/125 (55%)
Frame = +3
Query: 108 EYEKETKLSTLLKEIMAEKENKTIIFIETKRRVDDITRKMKRDGWPAVCIHGDXSQNERD 287
E +K L+TL ++ N++IIF + RV+ + +K+ G+ H Q+ R+
Sbjct: 265 ESQKVHCLNTLFSKLQI---NQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQSHRN 321
Query: 288 WVLQDFRSGKAPILVATDVAARGLDVDDVKFVINFDYPSHSEDYVHRIGXXGXXNKTGTA 467
V +FR+G LV +D+ RG+D+ V VINFD+P ++E Y+HRIG G G A
Sbjct: 322 RVFHNFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHRGLA 381
Query: 468 YTFFT 482
+F +
Sbjct: 382 ISFIS 386
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 79.4 bits (187), Expect = 6e-16
Identities = 38/108 (35%), Positives = 59/108 (54%), Gaps = 6/108 (5%)
Frame = +3
Query: 171 KTIIFIETKRRVDDITRKMKRDGWPAVCIHGDXSQNERDWVLQDFRSGKAPILVATDVAA 350
++IIF + K ++I R+M DG C+ G+ +RD ++ FR G + +LV T+V A
Sbjct: 354 QSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIA 413
Query: 351 RGLDVDDVKFVINFDYP------SHSEDYVHRIGXXGXXNKTGTAYTF 476
RG+DV V V+N+D P + Y+HRIG G + G + F
Sbjct: 414 RGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINF 461
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 76.6 bits (180), Expect = 4e-15
Identities = 44/122 (36%), Positives = 64/122 (52%)
Frame = +3
Query: 108 EYEKETKLSTLLKEIMAEKENKTIIFIETKRRVDDITRKMKRDGWPAVCIHGDXSQNERD 287
E + L L KE+ +TIIF +K + A IHG SQ +R
Sbjct: 488 ELLRPAMLIYLCKELF---HRRTIIFFRSKAFAHKMRVIFGLLSLNATEIHGSLSQEQRV 544
Query: 288 WVLQDFRSGKAPILVATDVAARGLDVDDVKFVINFDYPSHSEDYVHRIGXXGXXNKTGTA 467
L+DFR GK L+ATDVA+RG+D+ ++ VIN++ P+ E Y+HR+G ++G A
Sbjct: 545 RALEDFRDGKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSGRA 604
Query: 468 YT 473
T
Sbjct: 605 IT 606
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 74.1 bits (174), Expect = 2e-14
Identities = 41/114 (35%), Positives = 59/114 (51%)
Frame = +3
Query: 141 LKEIMAEKENKTIIFIETKRRVDDITRKMKRDGWPAVCIHGDXSQNERDWVLQDFRSGKA 320
L I + IIF+ R + I ++ +H + Q ER L FR+ A
Sbjct: 250 LLTIPENAKKSAIIFVNRTRTAELIYSILRLLELRVTELHSEMVQRERINSLGRFRAEAA 309
Query: 321 PILVATDVAARGLDVDDVKFVINFDYPSHSEDYVHRIGXXGXXNKTGTAYTFFT 482
ILVATDVA+RGLD+ V+ VINFD P +DY+HR+G ++G + + T
Sbjct: 310 KILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIVT 363
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 73.7 bits (173), Expect = 3e-14
Identities = 42/126 (33%), Positives = 61/126 (48%), Gaps = 2/126 (1%)
Frame = +3
Query: 126 KLSTLLKEIMAEKENKTIIFIETKRRVDDI--TRKMKRDGWPAVCIHGDXSQNERDWVLQ 299
KL L I + KTI+F+ + ++V + T + R G + +HG Q R V
Sbjct: 270 KLDILFGFIRTHLKFKTIVFLSSCKQVRFVYETFRRMRPGISLLHLHGKQKQTTRTEVTA 329
Query: 300 DFRSGKAPILVATDVAARGLDVDDVKFVINFDYPSHSEDYVHRIGXXGXXNKTGTAYTFF 479
F S + +L TD+ ARGLD V +VI D P + Y+HR+G N++G A
Sbjct: 330 KFTSSRHVVLFCTDIVARGLDFPAVDWVIQLDAPEDVDTYIHRVGRTARYNRSGNALLLL 389
Query: 480 TPSNAA 497
PS A
Sbjct: 390 LPSEEA 395
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 72.1 bits (169), Expect = 9e-14
Identities = 38/117 (32%), Positives = 63/117 (53%), Gaps = 1/117 (0%)
Frame = +3
Query: 123 TKLSTLLKEIMAEKENKTIIFIETKRRVDDITRKMKRD-GWPAVCIHGDXSQNERDWVLQ 299
+ LS L + + ++ I+F+ T VD + ++ P +H + +R + +
Sbjct: 278 SSLSLLQQLTSSNPSSRIIVFLPTISMVDFVGGVLENHLKIPCFILHSGLTTAQRRSITE 337
Query: 300 DFRSGKAPILVATDVAARGLDVDDVKFVINFDYPSHSEDYVHRIGXXGXXNKTGTAY 470
FR ++ IL ATDV ARG+D ++ V+ PS+++DY+HRIG G KTG AY
Sbjct: 338 SFRKCQSGILFATDVVARGMDFPNITQVVQITGPSNTDDYIHRIGRTGRAGKTGEAY 394
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 67.7 bits (158), Expect = 2e-12
Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 1/126 (0%)
Frame = +3
Query: 114 EKETKLSTLLKEIMAEKENKTIIFIETKRRVDDITRKMKRDGWPAVCIHGDXSQNERDWV 293
+ + + L + + K I+F+ + V + + P + +HG Q R
Sbjct: 319 DSDKRFLLLFSFLKRNLKKKVIVFMSSCASVKYMAELLNYIDLPVLDLHGKQKQQRRTNT 378
Query: 294 LQDFRSGKAPILVATDVAARGLDVDDVKFVINFDYPSHSEDYVHRIGXXGXXNK-TGTAY 470
+F + + IL+ T+VAARGLD+ V +++ +D P DY+HR+G K TG +
Sbjct: 379 FFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIHRVGRTARGTKGTGKSL 438
Query: 471 TFFTPS 488
F PS
Sbjct: 439 MFLAPS 444
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 66.1 bits (154), Expect = 6e-12
Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 3/154 (1%)
Frame = +3
Query: 60 QLAANHNILQIIDVCXEYEKETKLSTLLKEIMAEKENKTIIF---IETKRRVDDITRKMK 230
Q A +L+ + C EK+ L L+ KT++F IE +R+ ++K
Sbjct: 358 QSAVASRVLEGLIECAPAEKDLYLYYLIMRY----PGKTMVFANGIEDIKRITPFLNELK 413
Query: 231 RDGWPAVCIHGDXSQNERDWVLQDFRSGKAPILVATDVAARGLDVDDVKFVINFDYPSHS 410
+P +H Q +R L+ F++ +LV TDVAARG+D+ V VI++ P +
Sbjct: 414 VPSYP---LHAQLDQKKRLQSLEKFKNNPKGVLVCTDVAARGIDIPSVTHVIHYHVPHTA 470
Query: 411 EDYVHRIGXXGXXNKTGTAYTFFTPSNAAKASDL 512
+ YVHR G N+ G + P ++ L
Sbjct: 471 DMYVHRSGRTARANEDGVSILMCGPKELSQLKRL 504
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 63.7 bits (148), Expect = 3e-11
Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Frame = +3
Query: 255 IHGDXSQNERDWVLQDFRSGK---APILVATDVAARGLDVDDVKFVINFDYPSHSEDYVH 425
+HG SQ R L F S + + IL+ TDVAARGLD+ +V V+ +D P ++DY+H
Sbjct: 473 LHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYDAPFSTDDYLH 532
Query: 426 RIGXXGXXNKTGTAYTFFTPSNAAKASDLISVL 524
RIG G A F P K S+ I++L
Sbjct: 533 RIGRTARAGHNGAAIMFLLP----KESEYINLL 561
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 60.1 bits (139), Expect = 4e-10
Identities = 31/90 (34%), Positives = 46/90 (51%)
Frame = +3
Query: 270 SQNERDWVLQDFRSGKAPILVATDVAARGLDVDDVKFVINFDYPSHSEDYVHRIGXXGXX 449
S++ER ++ F +G +LV +D+ ARG+DV + + VIN+D P YVHRIG
Sbjct: 472 SRDERKKIISRFATGDLNLLVCSDLMARGIDVANTQNVINYDPPLSVRSYVHRIGRTARA 531
Query: 450 NKTGTAYTFFTPSNAAKASDLISVLXXAXP 539
+ G A+T S L+ L P
Sbjct: 532 GREGFAWTLVQSHEGHHFSKLVKQLRRTLP 561
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 59.7 bits (138), Expect = 5e-10
Identities = 45/144 (31%), Positives = 66/144 (45%), Gaps = 7/144 (4%)
Frame = +3
Query: 69 ANHNILQIIDVCXEYEKETKLSTLLKEIMA-EKENKTIIFIETKRRVDDITRKMKRDGWP 245
A NI + E L TL+K E + + IIF TK+ V+ I R++ +
Sbjct: 1382 ARENIFYFLHPYDNTEFLLDLRTLMKRTKVFEGDGRAIIFCRTKKDVEYIHRRLHQSDLF 1441
Query: 246 A---VCIH-GDXSQNERDWVLQDFRS--GKAPILVATDVAARGLDVDDVKFVINFDYPSH 407
A V I+ GD S ER FR+ GK I++AT G++ V+ V+++ P+
Sbjct: 1442 AHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYGLPAS 1501
Query: 408 SEDYVHRIGXXGXXNKTGTAYTFF 479
S DYV G G K A F+
Sbjct: 1502 SMDYVQETGRAGRDGKYAIAALFY 1525
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 59.7 bits (138), Expect = 5e-10
Identities = 45/144 (31%), Positives = 66/144 (45%), Gaps = 7/144 (4%)
Frame = +3
Query: 69 ANHNILQIIDVCXEYEKETKLSTLLKEIMA-EKENKTIIFIETKRRVDDITRKMKRDGWP 245
A NI + E L TL+K E + + IIF TK+ V+ I R++ +
Sbjct: 1382 ARENIFYFLHPYDNTEFLLDLRTLMKRTKVFEGDGRAIIFCRTKKDVEYIHRRLHQSDLF 1441
Query: 246 A---VCIH-GDXSQNERDWVLQDFRS--GKAPILVATDVAARGLDVDDVKFVINFDYPSH 407
A V I+ GD S ER FR+ GK I++AT G++ V+ V+++ P+
Sbjct: 1442 AHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYGLPAS 1501
Query: 408 SEDYVHRIGXXGXXNKTGTAYTFF 479
S DYV G G K A F+
Sbjct: 1502 SMDYVQETGRAGRDGKYAIAALFY 1525
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 59.3 bits (137), Expect = 7e-10
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Frame = +3
Query: 249 VCIHGDXSQNERDWVLQDFR-SGKAPILVATDVAARGLDVDDVKFVINFDYPSHSEDYVH 425
V +HG Q+ R + F+ S K +L TD+A+RGLD+ +V FV+ D P + + H
Sbjct: 286 VALHGQQVQSNRSRNFEKFKKSNKKTVLFTTDIASRGLDIPNVDFVLQLDPPLDPKSFSH 345
Query: 426 RIGXXGXXNKTGTAYTFFTPSNAAKASDLISV 521
R G G + G A + +L+ V
Sbjct: 346 RCGRAGRAGRAGVAIVLLNDGREEEYEELLRV 377
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 54.8 bits (126), Expect = 2e-08
Identities = 23/48 (47%), Positives = 32/48 (66%)
Frame = +3
Query: 348 ARGLDVDDVKFVINFDYPSHSEDYVHRIGXXGXXNKTGTAYTFFTPSN 491
ARGLD ++V V+NFD PS+++ Y+HRIG K GTA +F P +
Sbjct: 387 ARGLDFENVACVLNFDMPSNTKSYIHRIGRTARAGKPGTAMSFVVPKS 434
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 52.8 bits (121), Expect = 6e-08
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 1/103 (0%)
Frame = +3
Query: 177 IIFIETKRRVDDITRKMKRD-GWPAVCIHGDXSQNERDWVLQDFRSGKAPILVATDVAAR 353
II+ ++ + + K++ D G A H + ER + +++SG I+VAT
Sbjct: 746 IIYCLSRTSCEQVAAKLRNDYGLKAWHYHAGLEKVERQRIQNEWQSGSYKIIVATIAFGM 805
Query: 354 GLDVDDVKFVINFDYPSHSEDYVHRIGXXGXXNKTGTAYTFFT 482
G+D DV+FVI+ +P E Y G G K F++
Sbjct: 806 GVDKGDVRFVIHHSFPKSLEGYYQETGRAGRDGKPAHCIMFYS 848
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 43.2 bits (97), Expect = 5e-05
Identities = 37/130 (28%), Positives = 55/130 (42%), Gaps = 13/130 (10%)
Frame = +3
Query: 84 LQIIDVCXEYEKETKLSTLLKEIMAEKEN-KTIIFIETKRRVDDITRKMKRDGWPAVCIH 260
+ + D +K KL LLK + ++ +T+IF+E K ++ MK P + H
Sbjct: 333 IPVFDSTDVTDKVFKLLELLKATYRKSDSVRTVIFVERKATAFTLSLFMKTLNLPNIRAH 392
Query: 261 -----GDXSQNERDWV-------LQDFRSGKAPILVATDVAARGLDVDDVKFVINFDYPS 404
G Q E L F++GK +L+AT VA G+DV VI F+
Sbjct: 393 SFIGHGPSDQGEFSMTFRRQKDTLHKFKTGKYNVLIATAVAEEGIDVPSCNLVIRFNICR 452
Query: 405 HSEDYVHRIG 434
YV G
Sbjct: 453 TVTQYVQSRG 462
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 41.5 bits (93), Expect = 2e-04
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 10/117 (8%)
Frame = +3
Query: 162 KENKTIIFIETKRRVDDITR---KMKRDGWPAVCIH-------GDXSQNERDWVLQDFRS 311
K+ + +IF+E + ++I R K + PA+ I SQ ++ ++ F+
Sbjct: 431 KDTRIMIFVEIRSSAEEILRFLGKFYPNVRPAIFIGQSAVRKAAGMSQKLQNETVKQFQK 490
Query: 312 GKAPILVATDVAARGLDVDDVKFVINFDYPSHSEDYVHRIGXXGXXNKTGTAYTFFT 482
G+ L+AT + GLD+ +V +I +D + + R+G G K G Y T
Sbjct: 491 GEVNTLIATSIGEEGLDIGEVDMIICYDASASPIRMLQRMGRTGRKRK-GYIYMLLT 546
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 41.1 bits (92), Expect = 2e-04
Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 3/143 (2%)
Frame = +3
Query: 63 LAANH-NILQIIDVCXEYEKETKLSTLLKEIM--AEKENKTIIFIETKRRVDDITRKMKR 233
L+ NH + ++++ E+ K+T + +M E N T + + R
Sbjct: 444 LSLNHPKMNHLLELLKEHFKDTSEGYQNQRVMIFTEFRNTAEYITTTLLAIRPMVRASLF 503
Query: 234 DGWPAVCIHGDXSQNERDWVLQDFRSGKAPILVATDVAARGLDVDDVKFVINFDYPSHSE 413
G +Q ++ + FR+G LVAT + GLD+ D +I +D S
Sbjct: 504 IGQANSAYSTGMNQMQQKETIDQFRAGVINTLVATSIGEEGLDIGDTDMIICYDASSSPI 563
Query: 414 DYVHRIGXXGXXNKTGTAYTFFT 482
+ R+G G K+G + T
Sbjct: 564 RTIQRMGRTG-RKKSGKVFVLLT 585
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 40.3 bits (90), Expect = 3e-04
Identities = 19/73 (26%), Positives = 36/73 (49%)
Frame = +3
Query: 156 AEKENKTIIFIETKRRVDDITRKMKRDGWPAVCIHGDXSQNERDWVLQDFRSGKAPILVA 335
A + T++F + ++ G A + G+ + +ER+ ++QDFR K P+LV
Sbjct: 262 ASNRSSTLVFCINVEHSLKVCNAFRKLGIDARALFGETNDSERETLIQDFRKKKFPVLVN 321
Query: 336 TDVAARGLDVDDV 374
V G D+ ++
Sbjct: 322 CMVLTEGTDIPNI 334
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 33.9 bits (74), Expect = 0.030
Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 9/113 (7%)
Frame = +3
Query: 156 AEKENKTIIFIETKRRVDDITR--------KMKRDGWPAV-CIHGDXSQNERDWVLQDFR 308
AEK +TI+F ++ + + R K K D + + ER + +
Sbjct: 548 AEKRVRTIVFCRVRKTCESLMRLVRQELKTKQKGDLLSKIQSYRAGYTVQERRKIESEMF 607
Query: 309 SGKAPILVATDVAARGLDVDDVKFVINFDYPSHSEDYVHRIGXXGXXNKTGTA 467
+GK ++AT+ G+D+ + VI +P + + G G NK+ A
Sbjct: 608 NGKLYGIIATNALELGIDIGSLDAVITIGFPYSLSNLRQQFGRAGRRNKSSLA 660
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 29.1 bits (62), Expect = 0.86
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 141 LKEIMAEKENKTIIFIETKRRVDDITRKMKR 233
LKE++ EKEN I+ E R+V+D ++ R
Sbjct: 990 LKELLEEKENALIMMEEEMRQVNDANTELLR 1020
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 27.9 bits (59), Expect = 2.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 229 NVTDGXQCVFMVTNHKMKEIGCFKIF 306
+ TDG + +T H + +IGCF +F
Sbjct: 807 STTDGFGLAWAITEHIVTQIGCFCLF 832
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,195,746
Number of Sequences: 5004
Number of extensions: 32052
Number of successful extensions: 143
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -