Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_H14
         (1141 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    38   0.003
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    37   0.005
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    36   0.010
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    36   0.014
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.91 
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    28   2.8  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    28   2.8  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.7  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    27   6.4  
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe...    27   6.4  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 37.5 bits (83), Expect = 0.003
 Identities = 14/25 (56%), Positives = 14/25 (56%)
 Frame = +1

Query: 442 PPTGXPXPPXPPRGAXXXXPPPPPP 516
           P  G P PP PP G     PPPPPP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 29.1 bits (62), Expect = 1.2
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +1

Query: 445 PTGXPXPPXPPRGAXXXXPPPPPP 516
           P   P P  PP       PPPPPP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPP 767


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 37.1 bits (82), Expect = 0.005
 Identities = 24/53 (45%), Positives = 24/53 (45%)
 Frame = -1

Query: 592 GGXXVXGGGGGXXXARPPPGGGXXXGGGGXGGXXXXRPGGGXGGXGXRXGGEK 434
           GG    GGG G   AR    GG   G GG GG    R GG  GG G   GG K
Sbjct: 23  GGRGGFGGGRG--GARGGGRGGARGGRGGRGGARGGR-GGSSGGRGGAKGGAK 72



 Score = 36.3 bits (80), Expect = 0.008
 Identities = 19/44 (43%), Positives = 19/44 (43%)
 Frame = -1

Query: 574 GGGGGXXXARPPPGGGXXXGGGGXGGXXXXRPGGGXGGXGXRXG 443
           GG GG    R    GG    GGG GG      GG  GG G R G
Sbjct: 9   GGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGG 52



 Score = 33.1 bits (72), Expect = 0.074
 Identities = 21/48 (43%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
 Frame = -1

Query: 574 GGGGGXXXARPPPGGGXXXG-GGGXGGXXXXRPG--GGXGGXGXRXGG 440
           GG GG    R   GGG     GGG GG    R G  G  GG G   GG
Sbjct: 16  GGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGG 63



 Score = 27.9 bits (59), Expect = 2.8
 Identities = 17/45 (37%), Positives = 18/45 (40%)
 Frame = -1

Query: 574 GGGGGXXXARPPPGGGXXXGGGGXGGXXXXRPGGGXGGXGXRXGG 440
           G  GG   +R    GG     GG GG    R G   GG G   GG
Sbjct: 6   GSRGGRGGSR----GGRGGFNGGRGGFGGGRGGARGGGRGGARGG 46


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 35.9 bits (79), Expect = 0.010
 Identities = 14/27 (51%), Positives = 14/27 (51%)
 Frame = +1

Query: 436 SXPPTGXPXPPXPPRGAXXXXPPPPPP 516
           S PP   P PP PP       PPPPPP
Sbjct: 3   SLPPGNPPPPPPPPGFEPPSQPPPPPP 29



 Score = 33.1 bits (72), Expect = 0.074
 Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
 Frame = +1

Query: 445 PTGXPXPPXPPRG--AXXXXPPPPPP 516
           P G P PP PP G       PPPPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 35.5 bits (78), Expect = 0.014
 Identities = 20/50 (40%), Positives = 20/50 (40%)
 Frame = -1

Query: 592 GGXXVXGGGGGXXXARPPPGGGXXXGGGGXGGXXXXRPGGGXGGXGXRXG 443
           GG    GGG G     P   GG   G GG  G     PGG  GG G   G
Sbjct: 221 GGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGG 270



 Score = 35.1 bits (77), Expect = 0.018
 Identities = 20/50 (40%), Positives = 20/50 (40%)
 Frame = -1

Query: 589 GXXVXGGGGGXXXARPPPGGGXXXGGGGXGGXXXXRPGGGXGGXGXRXGG 440
           G    G GGG     P PGG    GG G  G      GG  GG G   GG
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGG 236



 Score = 34.3 bits (75), Expect = 0.032
 Identities = 23/56 (41%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
 Frame = -1

Query: 592 GGXXVXGGGGGXXXARPPPGGGXXXGGGGXGGXXXXRPG-----GGXGGXGXRXGG 440
           GG    GGG G     PPPG G   G GG GG      G     GG GG     GG
Sbjct: 188 GGFGGFGGGSGG----PPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGG 239



 Score = 33.1 bits (72), Expect = 0.074
 Identities = 21/52 (40%), Positives = 21/52 (40%)
 Frame = -1

Query: 595 FGGXXVXGGGGGXXXARPPPGGGXXXGGGGXGGXXXXRPGGGXGGXGXRXGG 440
           FGG    GG G         GGG     GG GG     PGG  GG G   GG
Sbjct: 207 FGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGG-PGGFGGGLGGFGGG 257



 Score = 30.3 bits (65), Expect = 0.52
 Identities = 21/49 (42%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
 Frame = -1

Query: 595 FGGXX--VXGGGGGXXXARPPPGGGXXXGGGGXGGXXXXRPGGGXGGXG 455
           FGG      GG GG        GGG    GGG GG      GGG GG G
Sbjct: 226 FGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGF-----GGGPGGHG 269



 Score = 26.6 bits (56), Expect = 6.4
 Identities = 17/45 (37%), Positives = 17/45 (37%)
 Frame = -1

Query: 574 GGGGGXXXARPPPGGGXXXGGGGXGGXXXXRPGGGXGGXGXRXGG 440
           G  GG         GG   G GG GG       GG GG G   GG
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGPGGFGGF------GGFGGEGHHHGG 222


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.91
 Identities = 15/53 (28%), Positives = 18/53 (33%)
 Frame = +3

Query: 345 PXPPPTXKXNXXGGGXXPPPXQTXKXXXXXXSPPXRXPXPPXPPPGRXXXXPP 503
           P PPP  + N  G    PP  ++        S P     PP     R    PP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPP 389



 Score = 28.7 bits (61), Expect = 1.6
 Identities = 20/73 (27%), Positives = 22/73 (30%), Gaps = 9/73 (12%)
 Frame = +3

Query: 288 PPXXXXXXXXXIXKKKXXAPXPPPTXKXNXX---GGGXX------PPPXQTXKXXXXXXS 440
           PP            KK   P PPP+ +       G G        PPP            
Sbjct: 294 PPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPL 353

Query: 441 PPXRXPXPPXPPP 479
           PP     PP PPP
Sbjct: 354 PPQGRSAPPPPPP 366



 Score = 28.3 bits (60), Expect = 2.1
 Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 3/68 (4%)
 Frame = +3

Query: 288 PPXXXXXXXXXIXKKKXXAPXPPPTXKXNXXGGGXXPPPXQTXKXXXXXXSPPXRXP--- 458
           PP         +  +   AP PPP    +    G  PPP  + +      +PP   P   
Sbjct: 342 PPRSNAAGSIPLPPQGRSAPPPPPPR--SAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRS 399

Query: 459 XPPXPPPG 482
            P  PP G
Sbjct: 400 APALPPLG 407



 Score = 26.6 bits (56), Expect = 6.4
 Identities = 14/40 (35%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
 Frame = +1

Query: 397 PXPXKXXXXXXXXSXPPTGXP-XPPXPPRGAXXXXPPPPP 513
           P P            PP G    PP PPR A      PPP
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 16/35 (45%), Positives = 16/35 (45%)
 Frame = -1

Query: 544 PPPGGGXXXGGGGXGGXXXXRPGGGXGGXGXRXGG 440
           P  GGG   G GG GG       GG GG G   GG
Sbjct: 443 PRTGGGSRGGRGGFGGR------GGFGGRGGFGGG 471


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -1

Query: 550 ARPPPGGGXXXGGGGXGGXXXXRPGG 473
           A PPP G     G G GG     PGG
Sbjct: 74  AAPPPPGAEGGPGAGFGGFPGAGPGG 99


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 12/25 (48%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
 Frame = +1

Query: 442  PPTGXPXPP-XPPRGAXXXXPPPPP 513
            PP   P PP  PP  A     PPPP
Sbjct: 1710 PPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 12/24 (50%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
 Frame = +1

Query: 445 PTGXPXPPXP-PRGAXXXXPPPPP 513
           P   P PP P P  A    PPPPP
Sbjct: 725 PQVTPAPPTPAPTPAVKHHPPPPP 748


>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
 Frame = -1

Query: 544 PPPGGGXXXG---GGGXGGXXXXRPGGGXGGXGXRXGG 440
           PPP  G   G   GGG  G      GG  G  G R GG
Sbjct: 99  PPPPRGPLFGPRIGGGHHGPLHGPHGGFGGRGGGRMGG 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,935,377
Number of Sequences: 5004
Number of extensions: 25375
Number of successful extensions: 232
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 607615510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)