Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_H14
         (1141 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   0.35 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   5.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   6.6  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect(2) = 0.35
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 499  PPPPPPXN 522
            PPPPPP N
Sbjct: 1859 PPPPPPRN 1866



 Score = 21.8 bits (44), Expect(2) = 0.35
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 442  PPTGXPXPPXPP 477
            P +G P PP PP
Sbjct: 1852 PVSGSPEPPPPP 1863


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 11/30 (36%), Positives = 11/30 (36%)
 Frame = -1

Query: 532 GGXXXGGGGXGGXXXXRPGGGXGGXGXRXG 443
           GG   G  G         GGG GG G   G
Sbjct: 28  GGVVTGASGGSIVVGANNGGGGGGLGIASG 57


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +1

Query: 463 PPXPPRGAXXXXPPPPPP 516
           PP P +G     PP  PP
Sbjct: 39  PPNPSQGPPPGGPPGAPP 56



 Score = 22.6 bits (46), Expect = 6.6
 Identities = 9/23 (39%), Positives = 9/23 (39%)
 Frame = +1

Query: 442 PPTGXPXPPXPPRGAXXXXPPPP 510
           P  G P PP P        PP P
Sbjct: 411 PSAGAPMPPIPNMSNMSGMPPLP 433



 Score = 22.2 bits (45), Expect = 8.8
 Identities = 10/32 (31%), Positives = 12/32 (37%)
 Frame = +3

Query: 387 GXXPPPXQTXKXXXXXXSPPXRXPXPPXPPPG 482
           G  P P Q+ +       P      PP  PPG
Sbjct: 22  GPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPG 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,760
Number of Sequences: 438
Number of extensions: 6206
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 38560320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)