Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_H13
(867 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr... 37 0.016
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p... 37 0.016
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp... 37 0.016
U23515-13|AAK21453.1| 823|Caenorhabditis elegans Hypothetical p... 31 1.1
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 30 1.9
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 1.9
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 1.9
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 1.9
Z82083-5|CAB04973.1| 298|Caenorhabditis elegans Hypothetical pr... 30 2.5
>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical protein
K08F8.6 protein.
Length = 2862
Score = 37.1 bits (82), Expect = 0.016
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +1
Query: 583 PLAGVF--PYAPPPLTHPPQTSXPQAHHXGQXPPGL*RSPXXFPP 711
P+A +F P PPP T P ++ P +HH PP +P FPP
Sbjct: 1210 PMASIFQSPTMPPPHTPSPFSAGPMSHHP-MGPPAYPGTPGSFPP 1253
>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
protein K08F8.6 protein.
Length = 2862
Score = 37.1 bits (82), Expect = 0.016
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +1
Query: 583 PLAGVF--PYAPPPLTHPPQTSXPQAHHXGQXPPGL*RSPXXFPP 711
P+A +F P PPP T P ++ P +HH PP +P FPP
Sbjct: 1210 PMASIFQSPTMPPPHTPSPFSAGPMSHHP-MGPPAYPGTPGSFPP 1253
>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
subunit Med13 protein.
Length = 2862
Score = 37.1 bits (82), Expect = 0.016
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +1
Query: 583 PLAGVF--PYAPPPLTHPPQTSXPQAHHXGQXPPGL*RSPXXFPP 711
P+A +F P PPP T P ++ P +HH PP +P FPP
Sbjct: 1210 PMASIFQSPTMPPPHTPSPFSAGPMSHHP-MGPPAYPGTPGSFPP 1253
>U23515-13|AAK21453.1| 823|Caenorhabditis elegans Hypothetical
protein R144.2a protein.
Length = 823
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = +1
Query: 583 PLAGVFPYAP-PPLTHPPQTSXPQAHHXGQXPP 678
P V P+ P PPL+ P PQ HH PP
Sbjct: 326 PPVSVAPFVPAPPLSSAPPFQHPQQHHPQLPPP 358
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/49 (34%), Positives = 19/49 (38%)
Frame = +1
Query: 565 PTR*KGPLAGVFPYAPPPLTHPPQTSXPQAHHXGQXPPGL*RSPXXFPP 711
PT + P P PP P Q P + G PPG R P F P
Sbjct: 702 PTSVQPPQPQQPPQGPPGPPGPQQHPGPYPGYPGYGPPGAMRPPAGFAP 750
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/42 (40%), Positives = 17/42 (40%)
Frame = +1
Query: 583 PLAGVFPYAPPPLTHPPQTSXPQAHHXGQXPPGL*RSPXXFP 708
P AG P PPP PP S P G PP SP P
Sbjct: 292 PRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPP 333
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/42 (40%), Positives = 17/42 (40%)
Frame = +1
Query: 583 PLAGVFPYAPPPLTHPPQTSXPQAHHXGQXPPGL*RSPXXFP 708
P AG P PPP PP S P G PP SP P
Sbjct: 313 PRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPP 354
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/42 (40%), Positives = 17/42 (40%)
Frame = +1
Query: 583 PLAGVFPYAPPPLTHPPQTSXPQAHHXGQXPPGL*RSPXXFP 708
P AG P PPP PP S P G PP SP P
Sbjct: 298 PRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPP 339
>Z82083-5|CAB04973.1| 298|Caenorhabditis elegans Hypothetical
protein ZK1010.7 protein.
Length = 298
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/50 (38%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Frame = +1
Query: 544 PXGHXXAPTR*KGPLAGVFPYAPP----PLTHPPQTSXPQAHHXGQXPPG 681
P G AP R P A FP PP +T PP T P PPG
Sbjct: 110 PPGKNGAPGRPGAPGAPGFPGRPPAVCEEITEPPCTPCPPGEPGPPGPPG 159
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,400,431
Number of Sequences: 27780
Number of extensions: 101634
Number of successful extensions: 421
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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