Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_H11
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...   197   2e-51
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...    40   5e-04
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    29   0.67 
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    26   8.3  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    26   8.3  

>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score =  197 bits (481), Expect = 2e-51
 Identities = 93/132 (70%), Positives = 112/132 (84%)
 Frame = +3

Query: 255 EISTILEERILGAAPKADLEETGRVLSIGDGIARVYGLKNIQAEEMVEFSSGLKGMALNL 434
           E+ +ILEERI GA  +A + E+GRVLSIGDGIAR+ GL N+QAEE+VEFSSG+KGMALNL
Sbjct: 35  EVPSILEERIRGAYNQAQMMESGRVLSIGDGIARISGLSNVQAEELVEFSSGIKGMALNL 94

Query: 435 EPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALXNPIDGKGPXDTKSR 614
           E D VG V+FGND+L++EG++VKRT  IVDVPVGE +LGRVVDAL NPIDGKGP  T  R
Sbjct: 95  EADTVGCVLFGNDRLVREGEVVKRTRHIVDVPVGEALLGRVVDALGNPIDGKGPIKTTER 154

Query: 615 MRVRIKAPGIIP 650
            RV++KAPGI+P
Sbjct: 155 RRVQLKAPGILP 166



 Score = 44.0 bits (99), Expect = 3e-05
 Identities = 24/42 (57%), Positives = 28/42 (66%)
 Frame = +1

Query: 649 PRXSVREPMQTGIKAVXSLGTNWSWXTRELIIXDRQTGXXAL 774
           PR SV EPMQTG+KA+ S+        RELII DRQTG  A+
Sbjct: 166 PRTSVCEPMQTGLKAIDSM-VPIGRGQRELIIGDRQTGKTAI 206


>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score = 39.9 bits (89), Expect = 5e-04
 Identities = 18/62 (29%), Positives = 33/62 (53%)
 Frame = +3

Query: 453 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALXNPIDGKGPXDTKSRMRVRIK 632
           + + G + L++ G  V  TG+ + +PVG   LGR+++ +  P+D +GP        +   
Sbjct: 108 IAMDGTEGLVR-GTAVIDTGSPISIPVGPGTLGRIMNVIGEPVDERGPIKAVKYSPIHAD 166

Query: 633 AP 638
           AP
Sbjct: 167 AP 168


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +3

Query: 507 TGAIVDVPVGEQILGRVVDALXNPIDGKGP 596
           TG  + +PV E +LGRV +    PID KGP
Sbjct: 92  TGHSMRIPVSEDMLGRVFNGSGLPID-KGP 120


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -2

Query: 393 PSPQPGCSSSHKHERYHHQCSRH-DQSLLDQPWAR 292
           P P  G    HK  ++   CS H D S+ ++P A+
Sbjct: 405 PVPHNGTKPDHKPWKHEEHCSCHEDHSVHERPSAK 439


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -3

Query: 602 VXWSLAVNRVTQSIYYTPKDLLSNGNVYDSTSTLDNISFLDKLVI 468
           + + +A N + + +Y TP+ L SNG +     +L     L ++VI
Sbjct: 606 ISFLMAKNVLVKLLYVTPEGLASNGAITRVLKSLYERKLLARIVI 650


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,232,321
Number of Sequences: 5004
Number of extensions: 62227
Number of successful extensions: 162
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)