Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_H11
         (892 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   1.2  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   2.8  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   4.9  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   6.5  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   6.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.5  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     22   6.5  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 659 DXRGNDTWRLNTDPHTGFXVXWSLAVNR 576
           D R   T +L+TDP+T F V  S  + R
Sbjct: 674 DSRIKTTEKLSTDPNTHFQVNQSHGIKR 701



 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 560 YYTPKDLLSNGNVYDSTSTLDNISFLDK 477
           +Y P+DL    ++Y++   L+  SF  K
Sbjct: 346 FYHPEDLPFIKDIYETVIKLEGASFRSK 373


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 74  TWLSVCHNYKFVKNVADLRSY 136
           TWL V  NYK +   A  R Y
Sbjct: 442 TWLPVNENYKSLNLAAQKREY 462


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = +2

Query: 47  YPQRVASGVTWLSVCHNYKFVKNVADLRSYC 139
           +P ++++G T +  CH        AD++  C
Sbjct: 349 HPGQISNGYTPVLDCHTAHIACKFADIKEKC 379


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 62  ASGVTWLSVCHNYKFVKNVAD 124
           +S  TWL V  NYK V   A+
Sbjct: 432 SSSNTWLRVNENYKTVNLAAE 452


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 62  ASGVTWLSVCHNYKFVKNVAD 124
           +S  TWL V  NYK V   A+
Sbjct: 432 SSSNTWLRVNENYKTVNLAAE 452


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 142 PAIRAEISDIFHKLIIVADGKPSYSARD 59
           P I    + +FH+ + +   KPSY A++
Sbjct: 392 PPISGSATPVFHQEMALYYLKPSYDAQE 419


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 560 YYTPKDLLSNGNVYDSTSTLDNISFLDK 477
           +Y P+DL    ++Y++   L+  SF  K
Sbjct: 52  FYHPEDLPFIKDIYETVIKLEGASFRSK 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,378
Number of Sequences: 438
Number of extensions: 4855
Number of successful extensions: 20
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)