Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_H10
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac...   120   4e-28
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S...   118   9e-28
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.6  
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ...    27   4.8  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    26   6.3  
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    26   6.3  

>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score =  120 bits (288), Expect = 4e-28
 Identities = 52/84 (61%), Positives = 60/84 (71%)
 Frame = +1

Query: 100 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 279
           MTKGT SFG R NK+HT+CRRCG+ S+HIQKS CA CGYPAAK RSY+W  KA       
Sbjct: 1   MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTG 60

Query: 280 XXXMRHLKIVRRRFRNGFKEGKPT 351
              M +LK V R F+NGF+ GKPT
Sbjct: 61  TGRMSYLKKVHRSFKNGFRAGKPT 84


>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 91

 Score =  118 bits (285), Expect = 9e-28
 Identities = 53/91 (58%), Positives = 61/91 (67%)
 Frame = +1

Query: 100 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 279
           MTKGT SFG R NK+HT+CRRCG+ S+HIQKS CA CGYPAAK RSY+W  KA       
Sbjct: 1   MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTG 60

Query: 280 XXXMRHLKIVRRRFRNGFKEGKPTPPKKAVA 372
              M +LK V R F+NGF+ GKP     A A
Sbjct: 61  TGRMSYLKKVHRSFKNGFRSGKPAAAVAASA 91


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/45 (31%), Positives = 14/45 (31%)
 Frame = +3

Query: 747 SCLKXPPPPXXXXXXXLGPXPXSSXXXPPXPXPXPXXXPXXXLPP 881
           S L  PPPP         P P      PP P P          PP
Sbjct: 334 SSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378


>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -2

Query: 308 TIFK*RMRPVPVVFLRLAFTDQW*DRNFAAGYPHWAHF 195
           T+F   +  +PV+ +   FT+ W   N A  +P  A F
Sbjct: 197 TMFYNNLLSIPVLVICTLFTEDWSAENIAQNFPPDAKF 234


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 55  CNFFYISFGLSMSDKMTKGTSSFGKR 132
           C  FY+S+   + D   K  S +GKR
Sbjct: 918 CFEFYLSYVYQLEDSFKKSNSRYGKR 943


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 64  FYISFGLSMSDKMTKGTSSFGKRRNKTHTLCRR 162
           F+I+ G S  +K      S GK +NK  TL RR
Sbjct: 253 FHINNGKSKEEKSHGENESGGKLKNKMSTLFRR 285


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,606,840
Number of Sequences: 5004
Number of extensions: 44628
Number of successful extensions: 124
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)