Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_H10
         (897 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83128-1|CAB05635.1|   92|Caenorhabditis elegans Hypothetical pr...   113   2e-25
Z77131-1|CAB00854.1|   91|Caenorhabditis elegans Hypothetical pr...   107   1e-23
U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin cyt...    33   0.37 
U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin cyt...    33   0.37 
AF098986-5|AAC67426.1|  671|Caenorhabditis elegans Hypothetical ...    32   0.48 
U41275-2|AAA82465.1|  438|Caenorhabditis elegans Hypothetical pr...    32   0.64 
U39666-1|AAA80412.2|  644|Caenorhabditis elegans Nematode astaci...    31   1.5  
Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical pr...    30   2.0  
U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    29   6.0  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    29   6.0  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    29   6.0  
Z92777-6|CAE17682.1|  353|Caenorhabditis elegans Hypothetical pr...    28   7.9  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    28   7.9  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    28   7.9  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    28   7.9  

>Z83128-1|CAB05635.1|   92|Caenorhabditis elegans Hypothetical
           protein W01D2.1 protein.
          Length = 92

 Score =  113 bits (272), Expect = 2e-25
 Identities = 47/87 (54%), Positives = 60/87 (68%)
 Frame = +1

Query: 100 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 279
           MTKGT +FGK+  K+HTLC+RCG+SS+HIQK +CA CGYP AK R+Y+W  K+       
Sbjct: 1   MTKGTQAFGKKHVKSHTLCKRCGKSSFHIQKKRCASCGYPDAKKRTYNWGAKSIRRRTTG 60

Query: 280 XXXMRHLKIVRRRFRNGFKEGKPTPPK 360
               RHL+ V  RFRNGF+EG    P+
Sbjct: 61  TGRTRHLRDVNARFRNGFREGTTPKPR 87


>Z77131-1|CAB00854.1|   91|Caenorhabditis elegans Hypothetical
           protein C54C6.1 protein.
          Length = 91

 Score =  107 bits (256), Expect = 1e-23
 Identities = 45/85 (52%), Positives = 57/85 (67%)
 Frame = +1

Query: 100 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 279
           MTKGT +FGK+  K+HTLC+RCG+SS+HIQK +CA CGY  AK R+Y+W  K+       
Sbjct: 1   MTKGTQAFGKKHVKSHTLCKRCGKSSFHIQKKRCASCGYQDAKKRTYNWGAKSIRRRTTG 60

Query: 280 XXXMRHLKIVRRRFRNGFKEGKPTP 354
               RHL+ V  RFRNGF+   P P
Sbjct: 61  TGRTRHLRDVNARFRNGFRGTTPKP 85


>U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform b
           protein.
          Length = 781

 Score = 32.7 bits (71), Expect = 0.37
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = +3

Query: 762 PPPPXXXXXXXLGPXPXSSXXXPPXPXPXPXXXP 863
           PPPP        G  P SS   PP P P P   P
Sbjct: 609 PPPPPPPPPQSFGMAPISSAAPPPPPPPPPMGLP 642


>U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform a
           protein.
          Length = 607

 Score = 32.7 bits (71), Expect = 0.37
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = +3

Query: 762 PPPPXXXXXXXLGPXPXSSXXXPPXPXPXPXXXP 863
           PPPP        G  P SS   PP P P P   P
Sbjct: 435 PPPPPPPPPQSFGMAPISSAAPPPPPPPPPMGLP 468


>AF098986-5|AAC67426.1|  671|Caenorhabditis elegans Hypothetical
           protein C36C9.4 protein.
          Length = 671

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = +1

Query: 82  LSMSDKMTKGTSS---FGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAA 225
           LS+ + + +  +S   + K    TH  C +CG+ + +    KC  CG P A
Sbjct: 78  LSLDESVAESANSIWTYNKNNFSTHHFCNKCGKVAQN--SKKCKHCGGPVA 126


>U41275-2|AAA82465.1|  438|Caenorhabditis elegans Hypothetical
           protein T25D1.2 protein.
          Length = 438

 Score = 31.9 bits (69), Expect = 0.64
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = +1

Query: 82  LSMSDKMTKGTSS---FGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAA 225
           LS+ + + +  +S   + K    TH  C +CG+ + +    KC  CG P A
Sbjct: 150 LSLDESVAESANSIWTYNKNNFSTHHFCNKCGKVAQN--SKKCKYCGGPVA 198


>U39666-1|AAA80412.2|  644|Caenorhabditis elegans Nematode astacin
           protease protein33 protein.
          Length = 644

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 23/75 (30%), Positives = 25/75 (33%), Gaps = 2/75 (2%)
 Frame = +3

Query: 663 LTRPPHXNXXPXXXFFFPGSXGAXWARFSCLKXPPPPXXXXXXX--LGPXPXSSXXXPPX 836
           LT+P      P   +FFPG     W        PPPP          GP P      PP 
Sbjct: 15  LTQPDFFERPPPPDWFFPGPL-RPWG-------PPPPWHRNRGPPPFGPPPPWDRPPPPW 66

Query: 837 PXPXPXXXPXXXLPP 881
             P     P   LPP
Sbjct: 67  RRPPWHRRPPWGLPP 81


>Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical
           protein C31C9.6 protein.
          Length = 965

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/40 (32%), Positives = 14/40 (35%)
 Frame = +3

Query: 762 PPPPXXXXXXXLGPXPXSSXXXPPXPXPXPXXXPXXXLPP 881
           PPPP         P P      PP P P P       +PP
Sbjct: 467 PPPPSRIPNPSPSPQPAEVSKSPPPPPPLPPIATPSSVPP 506


>U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical
           protein B0280.13 protein.
          Length = 616

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/40 (32%), Positives = 14/40 (35%)
 Frame = +3

Query: 762 PPPPXXXXXXXLGPXPXSSXXXPPXPXPXPXXXPXXXLPP 881
           PPPP         P P      PP P P P       +PP
Sbjct: 474 PPPPSRIPNPSPSPQPAEVSKSPPPPPPLPPIATPSSVPP 513


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 15/48 (31%), Positives = 17/48 (35%)
 Frame = +1

Query: 445 NXXXPPPPXXXXXPXXXPXXPGPGXPP*XXVNGXPT*XXXWXXWXPPP 588
           N   PPPP     P   P   G   PP   + G P     +    PPP
Sbjct: 71  NGFIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPP 118


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = +3

Query: 762 PPPPXXXXXXXLGPXPXSSXXXPPXPXPXPXXXP 863
           PP P         P P SS   PP P P P   P
Sbjct: 275 PPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTP 308


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = +3

Query: 762 PPPPXXXXXXXLGPXPXSSXXXPPXPXPXPXXXP 863
           PP P         P P SS   PP P P P   P
Sbjct: 285 PPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTP 318


>Z92777-6|CAE17682.1|  353|Caenorhabditis elegans Hypothetical
           protein C17H1.9 protein.
          Length = 353

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = +2

Query: 131 AEIRPIRYAEDVVDRH---ITFKNQNAPNVDILQQNYDP 238
           A+++ I+Y  D +++H   + F+NQ   +   L+ N DP
Sbjct: 230 ADLKKIKYTSDEIEKHKSKLEFRNQQLESSRTLEINADP 268


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = +3

Query: 762 PPPPXXXXXXXLGPXPXSSXXXPPXPXPXPXXXPXXXLPPXXG 890
           PPPP         P P      PP     P   P   LPP  G
Sbjct: 714 PPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISG 756


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = +3

Query: 762 PPPPXXXXXXXLGPXPXSSXXXPPXPXPXPXXXPXXXLPPXXG 890
           PPPP         P P      PP     P   P   LPP  G
Sbjct: 714 PPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISG 756


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = +3

Query: 762 PPPPXXXXXXXLGPXPXSSXXXPPXPXPXPXXXPXXXLPPXXG 890
           PPPP         P P      PP     P   P   LPP  G
Sbjct: 297 PPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISG 339


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,785,643
Number of Sequences: 27780
Number of extensions: 335247
Number of successful extensions: 962
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)