Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_H08
         (843 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe...    30   0.36 
SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomy...    27   3.3  
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    27   3.3  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    27   4.4  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    27   4.4  
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    26   5.8  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           26   5.8  
SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo...    26   7.7  

>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 675

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -1

Query: 270 SDQSGLPTWHIQGASLALNKLSQFTESKSRTLSGTTRMFIR 148
           SD+  LP +H+Q A +   KL+ +  SK RT++     F+R
Sbjct: 4   SDEVDLPVYHLQNAPIENGKLNDW-RSKGRTVAFKLHPFLR 43


>SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = -2

Query: 602 VRSALVRSGILIPSGLMSPLNVQEHVVLCPRLPRAAEVSVDCVRLAVKQYSPQVALPGSR 423
           VR +   S   I S L+S + V++H  L   + R   V VDC +    + +P V +P ++
Sbjct: 184 VRLSEFPSRATIASTLLSDIPVEQHESLVDFIIRLYSVYVDC-QFTYLEINPLVVIPTAK 242


>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1067

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -2

Query: 755  VLRLYNPRLSPDSEYVPNVDSPVCMVHMLLQYYNTQNPCVARPAG 621
            VL +   +L    +Y+ N      + HM+L  Y  QNPC+ +  G
Sbjct: 976  VLPIVFSKLPLKEDYLENAP----LYHMILALYRQQNPCLVQHLG 1016


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +1

Query: 460 LTAKRTQSTLTSAALGKRGHRTTCSCTLRG 549
           + A+   ++ T    G RGH   C+C + G
Sbjct: 343 IMARAAGASTTKMKFGNRGHNIPCTCMISG 372


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 152 FADDCNRKHHGKIMQTISCTS*NTLVLRCSS 60
           + D CNRK + K + TI C++  T ++  SS
Sbjct: 407 YKDSCNRKSNQKNVGTIRCSNLCTEIVEYSS 437


>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 670 FSSTTIPKTPV*HDLPDKFTDP 605
           F S T+ +TP  H +PD FT+P
Sbjct: 235 FGSATV-QTPCLHSVPDAFTNP 255


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 770  KVPRXVLRLYNPRLSPDSEYVPNVDSPVCMV 678
            K P+ V  ++NPR+  +  Y  N+D P  +V
Sbjct: 1034 KNPKVVTGVFNPRILANRPYRTNIDYPFKVV 1064


>SPAC1687.13c |csn5||COP9/signalosome complex subunit
           Csn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 299

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -1

Query: 813 HTLPNYFGWSSGY*QSTXXRSSPVQSPIIA 724
           H+ PNY  W SG    T  ++   Q P +A
Sbjct: 118 HSHPNYGCWLSGVDVETQRQNQKYQDPFVA 147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,647,862
Number of Sequences: 5004
Number of extensions: 77619
Number of successful extensions: 196
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)