Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_H07
         (856 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomy...    99   4e-22
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.48 
SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyc...    27   2.6  
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    26   5.9  

>SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score =   99 bits (238), Expect = 4e-22
 Identities = 44/71 (61%), Positives = 53/71 (74%)
 Frame = +1

Query: 316 LLKYMSSGPVVPMVWEGLNVVKTGRKXPGATNPTDSXPGTIRGDLWIQXGRNIIHGSDTV 495
           L+ +M+SGPV  M+WEG   VKTGR   GA+NP DS PGTIRGD  I  GRN+ HGSD++
Sbjct: 63  LVGFMASGPVCAMIWEGKQAVKTGRLMLGASNPLDSAPGTIRGDYGIDLGRNVCHGSDSI 122

Query: 496 ESAXKEIGLWF 528
           ESA +EI LWF
Sbjct: 123 ESANREIKLWF 133



 Score = 72.5 bits (170), Expect = 7e-14
 Identities = 31/57 (54%), Positives = 43/57 (75%)
 Frame = +3

Query: 138 ERTFIMVXPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLXQHYSDLASRPFF 308
           E+TFI V PD VQRGL+G II +FE KG+KL  LKF+ PS +L+ +HY++   +PF+
Sbjct: 4   EQTFIAVKPDAVQRGLIGYIISKFELKGYKLRALKFLVPSRDLVEEHYAEHKGKPFY 60


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.48
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = +2

Query: 680 PPXPPXPXPXXXPXXXXXPRPPXXPXMXGSXXPP 781
           P   P P P   P     P PP  P + G+  PP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777



 Score = 29.5 bits (63), Expect = 0.64
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = +2

Query: 680 PPXPPXPXPXXXPXXXXXPRPPXXPXMXGSXXPP 781
           PP PP       P     P PP  P M G   PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765


>SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 313

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -3

Query: 218 FLFETFNNGAHKTTLYTIRXNHNKSTLTLFRHHDNIXNV 102
           + ++T NNG +KT   T    + K+   +F+  D +  V
Sbjct: 174 YFYDTVNNGVYKTGFATTAEAYEKNVRVVFQGLDRLEQV 212


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 223 KPFFSKRSIMVPTRPRCTPSGLT 155
           KPF +KRS ++P RP  T   L+
Sbjct: 512 KPFVNKRSKVLPLRPSVTHDNLS 534


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,423,420
Number of Sequences: 5004
Number of extensions: 38578
Number of successful extensions: 83
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)