Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_H02
         (854 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   174   1e-44
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   174   1e-44
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.5  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    26   5.9  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    26   5.9  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  174 bits (424), Expect = 1e-44
 Identities = 80/127 (62%), Positives = 90/127 (70%)
 Frame = +1

Query: 217 FVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTH 396
           FVFKAPIRPDLV  VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGGTH
Sbjct: 26  FVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTH 85

Query: 397 RSGRGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIE 576
           RSG+ AFGNMCR GRMFAPTK WR+WH                          ARGH IE
Sbjct: 86  RSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASAVAASGVPSLLLARGHRIE 145

Query: 577 KIPXLPL 597
           +IP +PL
Sbjct: 146 EIPEVPL 152



 Score = 50.0 bits (114), Expect = 4e-07
 Identities = 33/80 (41%), Positives = 45/80 (56%)
 Frame = +2

Query: 521 PLLLLASQRSFRLEDTLLKRFPSFPLVVADKVHEIXKTQXAVIFPEAPSXPWSDILKVYX 700
           P LLLA  R  R+E+      P  PLVV D V    KT+ AV   +     + D++KV  
Sbjct: 134 PSLLLA--RGHRIEE-----IPEVPLVVDDAVQSFQKTKEAVALLKEIKA-YRDVIKVAN 185

Query: 701 SQRLXAGTGKMRXRRPIQRK 760
           S++L AG GK+R RR +QR+
Sbjct: 186 SRKLRAGKGKLRNRRHVQRR 205


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  174 bits (424), Expect = 1e-44
 Identities = 80/127 (62%), Positives = 90/127 (70%)
 Frame = +1

Query: 217 FVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTH 396
           FVFKAPIRPDLV  VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGGTH
Sbjct: 26  FVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTH 85

Query: 397 RSGRGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIE 576
           RSG+ AFGNMCR GRMFAPTK WR+WH                          ARGH IE
Sbjct: 86  RSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSAVAASGVPSLLLARGHRIE 145

Query: 577 KIPXLPL 597
           +IP +PL
Sbjct: 146 EIPEVPL 152



 Score = 49.6 bits (113), Expect = 6e-07
 Identities = 33/80 (41%), Positives = 45/80 (56%)
 Frame = +2

Query: 521 PLLLLASQRSFRLEDTLLKRFPSFPLVVADKVHEIXKTQXAVIFPEAPSXPWSDILKVYX 700
           P LLLA  R  R+E+      P  PLVV D V    KT+ AV   +     + D++KV  
Sbjct: 134 PSLLLA--RGHRIEE-----IPEVPLVVDDAVQSFQKTKEAVALLKEIKA-YRDVVKVAN 185

Query: 701 SQRLXAGTGKMRXRRPIQRK 760
           S++L AG GK+R RR +QR+
Sbjct: 186 SRKLRAGKGKLRNRRHVQRR 205


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -1

Query: 437  PPRHMLPKAPRPDLWVPPPRTRGIRATARPVPHDSA 330
            PP    P  P+P + VPP       +TA PVP  SA
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVPP---PSTAPPVPTPSA 1224


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 199 APCTVSLFSEYTDTKGRATDRLISLL 122
           A C V ++SEYT   G ++  L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 13/28 (46%), Positives = 22/28 (78%)
 Frame = -3

Query: 609 SATTKGKLGNLFNNVSSSLNERWDASSS 526
           SAT+  +L ++F+N+SSS++   DASS+
Sbjct: 670 SATSNSQLSSIFSNLSSSIS---DASSN 694


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,106,473
Number of Sequences: 5004
Number of extensions: 57990
Number of successful extensions: 160
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)