Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_H02
         (854 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   148   6e-36
Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical pr...    31   1.0  
U28729-6|AAA68292.1|  549|Caenorhabditis elegans Phosphodiestera...    31   1.0  
U28729-5|AAO38607.1|  674|Caenorhabditis elegans Phosphodiestera...    31   1.0  
U28729-4|AAN60496.1|  599|Caenorhabditis elegans Phosphodiestera...    31   1.0  
U28729-3|AAO38608.1|  612|Caenorhabditis elegans Phosphodiestera...    31   1.0  
U28729-2|AAK77625.1|  626|Caenorhabditis elegans Phosphodiestera...    31   1.0  
U28729-1|ABB88209.1|  673|Caenorhabditis elegans Phosphodiestera...    31   1.0  
Z96047-4|CAB09414.1|  796|Caenorhabditis elegans Hypothetical pr...    29   5.6  
Z73102-2|CAB63428.1|  341|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z73102-1|CAA97419.1|  298|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z47811-4|CAD57701.1|  422|Caenorhabditis elegans Hypothetical pr...    28   7.4  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  148 bits (358), Expect = 6e-36
 Identities = 69/126 (54%), Positives = 84/126 (66%)
 Frame = +1

Query: 220 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR 399
           VF+ PIRPDLV+ +   + +N RQ + V+ +AG Q SAESWGTGRAVARIPRVRGGGTHR
Sbjct: 26  VFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQHSAESWGTGRAVARIPRVRGGGTHR 85

Query: 400 SGRGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEK 579
           SG+GAFGNMCRGG MFAP K +RRWH                         QARGH+I++
Sbjct: 86  SGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSAIAASGIPALLQARGHVIDQ 145

Query: 580 IPXLPL 597
           +  +PL
Sbjct: 146 VAEVPL 151



 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 28/55 (50%), Positives = 36/55 (65%)
 Frame = +2

Query: 593 PLVVADKVHEIXKTQXAVIFPEAPSXPWSDILKVYXSQRLXAGTGKMRXRRPIQR 757
           PLVV+DKV    KT+ AV+F    S  W+DI KVY S+R  AG GK+R R+  Q+
Sbjct: 150 PLVVSDKVESFRKTKEAVVFLRR-SHLWADIEKVYNSKRNRAGKGKLRNRQHKQK 203


>Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical
           protein F40F8.11 protein.
          Length = 472

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
 Frame = +1

Query: 280 NSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR---SGRGAFGNMCRGGRMFA 450
           N R    V K   H+    SW T     +  R  GGG  R   SG    G   RGGR   
Sbjct: 137 NKRGTKGVQKMPNHRLEGNSWETNGLQNQTARGGGGGRGRGRGSGGRGRGGFNRGGRFNG 196

Query: 451 PTKP 462
             KP
Sbjct: 197 APKP 200


>U28729-6|AAA68292.1|  549|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoforma protein.
          Length = 549

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 123 SSEMSLSVARPLVSVYSEKSETVQGAAKPLPXRIQGAHTSGP 248
           SS+    V++ L++ Y +K E        +P  +QG  TSGP
Sbjct: 131 SSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPSTSGP 172


>U28729-5|AAO38607.1|  674|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoformd protein.
          Length = 674

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 123 SSEMSLSVARPLVSVYSEKSETVQGAAKPLPXRIQGAHTSGP 248
           SS+    V++ L++ Y +K E        +P  +QG  TSGP
Sbjct: 256 SSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPSTSGP 297


>U28729-4|AAN60496.1|  599|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoformc protein.
          Length = 599

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 123 SSEMSLSVARPLVSVYSEKSETVQGAAKPLPXRIQGAHTSGP 248
           SS+    V++ L++ Y +K E        +P  +QG  TSGP
Sbjct: 181 SSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPSTSGP 222


>U28729-3|AAO38608.1|  612|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoforme protein.
          Length = 612

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 123 SSEMSLSVARPLVSVYSEKSETVQGAAKPLPXRIQGAHTSGP 248
           SS+    V++ L++ Y +K E        +P  +QG  TSGP
Sbjct: 194 SSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPSTSGP 235


>U28729-2|AAK77625.1|  626|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoformb protein.
          Length = 626

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 123 SSEMSLSVARPLVSVYSEKSETVQGAAKPLPXRIQGAHTSGP 248
           SS+    V++ L++ Y +K E        +P  +QG  TSGP
Sbjct: 208 SSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPSTSGP 249


>U28729-1|ABB88209.1|  673|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoformg protein.
          Length = 673

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 123 SSEMSLSVARPLVSVYSEKSETVQGAAKPLPXRIQGAHTSGP 248
           SS+    V++ L++ Y +K E        +P  +QG  TSGP
Sbjct: 255 SSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPSTSGP 296


>Z96047-4|CAB09414.1|  796|Caenorhabditis elegans Hypothetical
           protein DY3.5 protein.
          Length = 796

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -1

Query: 443 IRPPRHMLPKA-PRPDLWVPPPRTRGIRATARPVPHDSALVW*PA 312
           I P   ++PK+ PRP     PP     RAT RP P + A+   PA
Sbjct: 630 IAPSSSVVPKSQPRPSPTTRPPT----RATIRPTPQNKAVTSRPA 670


>Z73102-2|CAB63428.1|  341|Caenorhabditis elegans Hypothetical
           protein B0035.1b protein.
          Length = 341

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -1

Query: 437 PPRHMLPKAPRPDLWVPPPRTRGIRATAR-PVPH 339
           PP    P AP P +++PPP   G     R P+ H
Sbjct: 160 PPPRGYPPAPAPGVYMPPPGMPGAYPPPRMPIGH 193


>Z73102-1|CAA97419.1|  298|Caenorhabditis elegans Hypothetical
           protein B0035.1a protein.
          Length = 298

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -1

Query: 437 PPRHMLPKAPRPDLWVPPPRTRGIRATAR-PVPH 339
           PP    P AP P +++PPP   G     R P+ H
Sbjct: 160 PPPRGYPPAPAPGVYMPPPGMPGAYPPPRMPIGH 193


>Z47811-4|CAD57701.1|  422|Caenorhabditis elegans Hypothetical
           protein K02C4.5 protein.
          Length = 422

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -1

Query: 446 NIRPPRHMLPKAPRPDLWVPPPRT 375
           NIRPP    PK  +PD   PPP+T
Sbjct: 312 NIRPPIAQKPKLIQPDT-TPPPKT 334


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,734,545
Number of Sequences: 27780
Number of extensions: 357155
Number of successful extensions: 1178
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)