Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_G23
(926 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 36 0.006
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 32 0.13
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 31 0.30
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 29 1.2
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 24 1.3
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 28 1.6
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 27 2.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.8
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 27 3.8
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 23 4.5
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 5.0
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 26 6.6
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 26 6.6
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 8.7
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 8.7
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S... 26 8.7
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 36.3 bits (80), Expect = 0.006
Identities = 24/60 (40%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Frame = -3
Query: 918 GGRGXXXXG-GWXXGXGXGFCXGGGGXXGXGXGXXLGG-GXAEXXGGXKGGXRXGGGXXK 745
GGRG G G G GF G GG G G G GG G G +GG G G K
Sbjct: 9 GGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAK 68
Score = 33.5 bits (73), Expect = 0.043
Identities = 19/47 (40%), Positives = 20/47 (42%)
Frame = -3
Query: 873 GXGFCXGGGGXXGXGXGXXLGGGXAEXXGGXKGGXRXGGGXXKKXRG 733
G G GG G G G GGG GG +GG R G G RG
Sbjct: 10 GRGGSRGGRGGFNGGRGG-FGGGRGGARGGGRGGARGGRGGRGGARG 55
Score = 32.7 bits (71), Expect = 0.075
Identities = 21/57 (36%), Positives = 23/57 (40%), Gaps = 6/57 (10%)
Frame = -3
Query: 918 GGRGXXXXGGWXXGXGXGFCXGG------GGXXGXGXGXXLGGGXAEXXGGXKGGXR 766
GGRG G G G G GG GG G G GG + GG KGG +
Sbjct: 16 GGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGGAK 72
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 31.9 bits (69), Expect = 0.13
Identities = 20/55 (36%), Positives = 22/55 (40%)
Frame = -3
Query: 924 GXGGRGXXXXGGWXXGXGXGFCXGGGGXXGXGXGXXLGGGXAEXXGGXKGGXRXG 760
G GRG GG+ G G GG G G GG GG +GG R G
Sbjct: 133 GPAGRGGR--GGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGG 185
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 30.7 bits (66), Expect = 0.30
Identities = 22/57 (38%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Frame = -3
Query: 924 GXGGRGXXXXGGWXXGXGXGFCXGGGGXXGXGXGXXLGGGXAEXXGGXKG-GXRXGG 757
G GG G G G GF G GG G G GGG GG G G GG
Sbjct: 206 GFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGG--FGGGPGGFGGGLGGFGGGPGG 260
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = +1
Query: 655 PPPPSXXXPXXPPXFT-PHLLPXXXXKPPXFFXXPTPXP 768
PP P P +T +L P +PP FF P+P P
Sbjct: 238 PPYPQMLGPGSISSYTNSNLGPSAGFRPPTFFSSPSPQP 276
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 23.8 bits (49), Expect(2) = 1.3
Identities = 13/39 (33%), Positives = 14/39 (35%)
Frame = +1
Query: 652 PPPPPSXXXPXXPPXFTPHLLPXXXXKPPXFFXXPTPXP 768
PPPPP+ P TP P P P P P
Sbjct: 733 PPPPPAVIVP------TPAPAPIPVPPPAPIMGGPPPPP 765
Score = 23.0 bits (47), Expect(2) = 1.3
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +1
Query: 889 PPPXXPPPP 915
PPP PPPP
Sbjct: 775 PPPPPPPPP 783
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -3
Query: 810 GGXAEXXGGXKGGXRXGGGXXKKXRGF 730
GG G +GG R GGG + RGF
Sbjct: 511 GGNYRRGGYGRGGFRRGGGYGNRNRGF 537
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 27.5 bits (58), Expect = 2.8
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Frame = +2
Query: 845 PPP----PXQNPXPXPXHHPPXXXXPLPP 919
PPP P ++ P P HH P P PP
Sbjct: 209 PPPMHHKPGEHMPPPPMHHEPGEHMPPPP 237
Score = 27.5 bits (58), Expect = 2.8
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Frame = +2
Query: 845 PPP----PXQNPXPXPXHHPPXXXXPLPP 919
PPP P ++ P P HH P P PP
Sbjct: 222 PPPMHHEPGEHMPPPPMHHEPGEHMPPPP 250
Score = 27.5 bits (58), Expect = 2.8
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Frame = +2
Query: 845 PPP----PXQNPXPXPXHHPPXXXXPLPP 919
PPP P ++ P P HH P P PP
Sbjct: 235 PPPMHHEPGEHMPPPPMHHEPGEHMPPPP 263
Score = 27.5 bits (58), Expect = 2.8
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Frame = +2
Query: 845 PPP----PXQNPXPXPXHHPPXXXXPLPP 919
PPP P ++ P P HH P P PP
Sbjct: 248 PPPMHHEPGEHMPPPPMHHEPGEHMPPPP 276
Score = 27.5 bits (58), Expect = 2.8
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Frame = +2
Query: 845 PPP----PXQNPXPXPXHHPPXXXXPLPP 919
PPP P ++ P P HH P P PP
Sbjct: 261 PPPMHHEPGEHMPPPPMHHEPGEHMPPPP 289
Score = 27.5 bits (58), Expect = 2.8
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Frame = +2
Query: 845 PPP----PXQNPXPXPXHHPPXXXXPLPP 919
PPP P ++ P P HH P P PP
Sbjct: 274 PPPMHHEPGEHMPPPPMHHEPGEHMPPPP 302
Score = 27.5 bits (58), Expect = 2.8
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Frame = +2
Query: 845 PPP----PXQNPXPXPXHHPPXXXXPLPP 919
PPP P ++ P P HH P P PP
Sbjct: 287 PPPMHHEPGEHMPPPPMHHEPGEHMPPPP 315
Score = 27.5 bits (58), Expect = 2.8
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Frame = +2
Query: 845 PPP----PXQNPXPXPXHHPPXXXXPLPP 919
PPP P ++ P P HH P P PP
Sbjct: 300 PPPMHHEPGEHMPPPPMHHEPGEHMPPPP 328
Score = 27.5 bits (58), Expect = 2.8
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Frame = +2
Query: 845 PPP----PXQNPXPXPXHHPPXXXXPLPP 919
PPP P ++ P P HH P P PP
Sbjct: 313 PPPMHHEPGEHMPPPPMHHEPGEHMPPPP 341
Score = 25.8 bits (54), Expect = 8.7
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +2
Query: 854 PXQNPXPXPXHHPPXXXXPLPP 919
P ++ P P HH P P PP
Sbjct: 203 PGEHMPPPPMHHKPGEHMPPPP 224
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.5 bits (58), Expect = 2.8
Identities = 17/59 (28%), Positives = 18/59 (30%), Gaps = 2/59 (3%)
Frame = +2
Query: 755 PPPXLXPPFXPPXXSAXXXXXXXXXXXPXXPPPPXQNPXPXPXHHPPXXXXP--LPPXP 925
P P + P P S P PPP P P P P P PP P
Sbjct: 1162 PKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220
Score = 25.8 bits (54), Expect = 8.7
Identities = 16/59 (27%), Positives = 18/59 (30%), Gaps = 2/59 (3%)
Frame = +2
Query: 755 PPPXLXPPFXPPXXSAXXXXXXXXXXXPXXPPPPXQNPXPXPXHHPPXXXXP--LPPXP 925
P P PP P +A P P P P P PP +PP P
Sbjct: 1153 PAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVP 1211
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 27.1 bits (57), Expect = 3.8
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +2
Query: 836 PXXPPPPXQNPXPXPXHHPP 895
P PP +P P HHPP
Sbjct: 161 PPFPPTQHHHPHTRPPHHPP 180
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 23.0 bits (47), Expect(2) = 4.5
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +1
Query: 886 PPPPXXPPP 912
PPPP PPP
Sbjct: 189 PPPPPPPPP 197
Score = 21.8 bits (44), Expect(2) = 4.5
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = +1
Query: 889 PPPXXPPPPXXP 924
P P PPPP P
Sbjct: 236 PAPPPPPPPTLP 247
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/51 (27%), Positives = 15/51 (29%)
Frame = +2
Query: 773 PPFXPPXXSAXXXXXXXXXXXPXXPPPPXQNPXPXPXHHPPXXXXPLPPXP 925
PP PP P PPPP + P LPP P
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPP 340
Score = 26.2 bits (55), Expect = 6.6
Identities = 20/89 (22%), Positives = 24/89 (26%), Gaps = 1/89 (1%)
Frame = +1
Query: 652 PPPPPSXXXPXXPPXFTPHLLPXXXXKPPXFFXXPTP-XPXTXLXSPXXFXXSTTQPXPX 828
P PPPS PP P + P P P + S + +P P
Sbjct: 255 PIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPP 314
Query: 829 XXPXXXXXXXXXXXXXXXXPPPPXXPPPP 915
P P PPPP
Sbjct: 315 PPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343
Score = 26.2 bits (55), Expect = 6.6
Identities = 21/73 (28%), Positives = 22/73 (30%)
Frame = +2
Query: 707 TSSPXXXXNPRXFXXXPPPXLXPPFXPPXXSAXXXXXXXXXXXPXXPPPPXQNPXPXPXH 886
TS+P P PP L P P P PP P P P
Sbjct: 412 TSTPPVP-TPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPL- 469
Query: 887 HPPXXXXPLPPXP 925
PP P PP P
Sbjct: 470 -PPAAPAP-PPAP 480
Score = 25.8 bits (54), Expect = 8.7
Identities = 15/59 (25%), Positives = 18/59 (30%), Gaps = 2/59 (3%)
Frame = +2
Query: 755 PPPXLXPPFXPPXXSAXXXXXXXXXXXPXXPP--PPXQNPXPXPXHHPPXXXXPLPPXP 925
P PP P S+ P PP PP P + PP P+ P
Sbjct: 224 PTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNP 282
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 26.2 bits (55), Expect = 6.6
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +2
Query: 845 PPPPXQNPXPXPXHHPP 895
P PP P P HHPP
Sbjct: 729 PAPPTPAPTPAVKHHPP 745
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 26.2 bits (55), Expect = 6.6
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Frame = -3
Query: 864 FCXGGGGXXGXGXGXXLGGGXAEXX---GGXKGGXRXGGGXXKKXRGF 730
F GG G GGG GG +GG GGG + RGF
Sbjct: 67 FSSNYGGRREYNRGGHYGGGEGRQNNYRGGREGGYSNGGGY-RNNRGF 113
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/30 (36%), Positives = 11/30 (36%)
Frame = +2
Query: 836 PXXPPPPXQNPXPXPXHHPPXXXXPLPPXP 925
P PPPP P P P PP P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +2
Query: 836 PXXPPPPXQNPXPXPXHHPPXXXXPLPP 919
P PPP P P P PP P PP
Sbjct: 6 PGNPPP----PPPPPGFEPPSQPPPPPP 29
>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +2
Query: 473 PHHPPXTYXXKIRXLPFPPXPXRXWSLRXPPS 568
PHH P + LP P R SLR P S
Sbjct: 74 PHHGPVRSPSSRKPLPASPSRTRDHSLRVPVS 105
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,018,153
Number of Sequences: 5004
Number of extensions: 26482
Number of successful extensions: 173
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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