Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_G22
         (880 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK022843-1|BAB14267.1|  292|Homo sapiens protein ( Homo sapiens ...    33   1.0  
Y08262-1|CAA69589.1|  914|Homo sapiens SCA2 protein.                   30   9.6  
U70323-1|AAB19200.1| 1312|Homo sapiens ataxin-2 protein.               30   9.6  

>AK022843-1|BAB14267.1|  292|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12781 fis, clone NT2RP2001861. ).
          Length = 292

 Score = 33.5 bits (73), Expect = 1.0
 Identities = 27/76 (35%), Positives = 34/76 (44%)
 Frame = -1

Query: 616 RPSVLKLGALGDGAGRVPDRERLGAQXVVVIVEQXDLACDAELLPEAGNAGPXQTQPVPV 437
           RP+ L LGA G GA   PD   LG +   V  EQ  L     + P+     P Q QP+ +
Sbjct: 183 RPTGLGLGAAGAGATVQPDAPLLGQEVPSVCHEQGHLG-GPSIGPQELPEQPQQPQPLDL 241

Query: 436 SATWTNEHEATQPGAQ 389
                 +H A  PG Q
Sbjct: 242 V-----QHHAPVPGRQ 252


>Y08262-1|CAA69589.1|  914|Homo sapiens SCA2 protein.
          Length = 914

 Score = 30.3 bits (65), Expect = 9.6
 Identities = 19/71 (26%), Positives = 30/71 (42%)
 Frame = +1

Query: 523 Q*QPRXERQGVRDQELSQRHPPXRPTSTRWGGGSGLXVQVSISARP*ALR*QXXVXEGTD 702
           Q Q + ++Q  + Q+  Q+ PP    + R  GGSGL    + +  P +            
Sbjct: 88  QQQQQQQQQQQQQQQQQQQQPPPAAANVRKPGGSGLLASPAAAPSPSSSSVSSSSATAPS 147

Query: 703 SKVVLXTEGGR 735
           S V   + GGR
Sbjct: 148 SVVAATSGGGR 158


>U70323-1|AAB19200.1| 1312|Homo sapiens ataxin-2 protein.
          Length = 1312

 Score = 30.3 bits (65), Expect = 9.6
 Identities = 19/71 (26%), Positives = 30/71 (42%)
 Frame = +1

Query: 523 Q*QPRXERQGVRDQELSQRHPPXRPTSTRWGGGSGLXVQVSISARP*ALR*QXXVXEGTD 702
           Q Q + ++Q  + Q+  Q+ PP    + R  GGSGL    + +  P +            
Sbjct: 168 QQQQQQQQQQQQQQQQQQQQPPPAAANVRKPGGSGLLASPAAAPSPSSSSVSSSSATAPS 227

Query: 703 SKVVLXTEGGR 735
           S V   + GGR
Sbjct: 228 SVVAATSGGGR 238


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,680,539
Number of Sequences: 237096
Number of extensions: 1745499
Number of successful extensions: 18773
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18773
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11215125244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)