Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_G19
         (1051 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    32   0.12 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.5  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 32.3 bits (70), Expect = 0.12
 Identities = 19/65 (29%), Positives = 21/65 (32%), Gaps = 2/65 (3%)
 Frame = +2

Query: 479 PPXXNXTXTXXPPPXSXPPXTPPXPRXLPXHLAXXXXXXXXPPXXLXPXVXXXPPXPP-- 652
           PP  N + T  PP  + P   P  P  LP                L P     PP P   
Sbjct: 404 PPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGM 463

Query: 653 PXXPP 667
           P  PP
Sbjct: 464 PAAPP 468



 Score = 30.7 bits (66), Expect = 0.36
 Identities = 19/65 (29%), Positives = 20/65 (30%)
 Frame = +2

Query: 479 PPXXNXTXTXXPPPXSXPPXTPPXPRXLPXHLAXXXXXXXXPPXXLXPXVXXXPPXPPPX 658
           PP  N   +   PP       PP PR  P            PP          PP PPP 
Sbjct: 342 PPRSNAAGSIPLPPQGRSAPPPPPPRSAP-------STGRQPPPLSSSRAVSNPPAPPPA 394

Query: 659 XPPXS 673
            P  S
Sbjct: 395 IPGRS 399


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 14/48 (29%), Positives = 15/48 (31%)
 Frame = +2

Query: 512 PPPXSXPPXTPPXPRXLPXHLAXXXXXXXXPPXXLXPXVXXXPPXPPP 655
           PPP    P   P P  +P            PP          PP PPP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 27.5 bits (58), Expect = 3.3
 Identities = 16/55 (29%), Positives = 17/55 (30%), Gaps = 2/55 (3%)
 Frame = +2

Query: 515 PPXSXPPXTPPXPRXLPXHLAXXXXXXXXPPXXLXPX--VXXXPPXPPPXXPPXS 673
           PP   P    P P   P  +         PP    P       PP PPP  P  S
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVS 786


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,115,019
Number of Sequences: 5004
Number of extensions: 9254
Number of successful extensions: 47
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 551223336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)