Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_G18
(888 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0664 + 24122958-24123070,24123184-24123261,24125040-241252... 65 6e-11
12_01_0443 - 3498848-3498980,3500504-3500789,3500928-3501006 33 0.40
11_01_0440 - 3358786-3358918,3359861-3360146,3360460-3360538 33 0.40
05_01_0043 - 295041-295173,296252-296537,296616-296697 33 0.40
02_04_0181 - 20705307-20705439,20705991-20706037,20706181-207062... 33 0.40
01_07_0267 + 42410174-42410252,42410679-42411097 31 1.6
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 29 4.9
>01_05_0664 +
24122958-24123070,24123184-24123261,24125040-24125210,
24125288-24125456
Length = 176
Score = 65.3 bits (152), Expect = 6e-11
Identities = 39/91 (42%), Positives = 49/91 (53%)
Frame = +2
Query: 428 VIFCEAVAIYGLITAIVLSGMLEKYSEPFTSVSVKQQNWMAGYVMFGAGLAVGLVNLFCX 607
VIFCEAVAIYG+I AI+L LE S P T++ ++ AGY +F +GL VG NL C
Sbjct: 65 VIFCEAVAIYGVIVAIILQTKLE--SVP-TALVHHPESLRAGYAIFASGLIVGFANLVCG 121
Query: 608 XXXXXXXXXXXXXXXXXXXXXVKILIVEIFG 700
VKIL++EIFG
Sbjct: 122 VCVGIIGSSCALSDAQNSSLFVKILVIEIFG 152
Score = 46.4 bits (105), Expect = 3e-05
Identities = 21/33 (63%), Positives = 26/33 (78%)
Frame = +1
Query: 328 SVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLIS 426
SV+GAA GI TG S++G +KAPRI +KNLIS
Sbjct: 32 SVLGAAWGIFITGSSLIGAAIKAPRITSKNLIS 64
>12_01_0443 - 3498848-3498980,3500504-3500789,3500928-3501006
Length = 165
Score = 32.7 bits (71), Expect = 0.40
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = +2
Query: 425 PVIFCEAVAIYGLITAIVLSGMLEKYSEP---FTSVSVKQQNWMAGYVMFGAGLAVGLV 592
PV+ + IYGLI A+++S + ++P F + G AG+A+G+V
Sbjct: 58 PVVMAGVLGIYGLIIAVIISTGINPKAKPYYLFDGYAHLSSGLACGLAGLAAGMAIGIV 116
Score = 29.5 bits (63), Expect = 3.7
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +2
Query: 428 VIFCEAVAIYGLITAIVLS 484
+IF EA+A+YGLI I+LS
Sbjct: 138 LIFAEALALYGLIVGIILS 156
>11_01_0440 - 3358786-3358918,3359861-3360146,3360460-3360538
Length = 165
Score = 32.7 bits (71), Expect = 0.40
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = +2
Query: 425 PVIFCEAVAIYGLITAIVLSGMLEKYSEP---FTSVSVKQQNWMAGYVMFGAGLAVGLV 592
PV+ + IYGLI A+++S + ++P F + G AG+A+G+V
Sbjct: 58 PVVMAGVLGIYGLIIAVIISTGINPKAKPYYLFDGYAHLSSGLACGLAGLAAGMAIGIV 116
Score = 29.5 bits (63), Expect = 3.7
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +2
Query: 428 VIFCEAVAIYGLITAIVLS 484
+IF EA+A+YGLI I+LS
Sbjct: 138 LIFAEALALYGLIVGIILS 156
>05_01_0043 - 295041-295173,296252-296537,296616-296697
Length = 166
Score = 32.7 bits (71), Expect = 0.40
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = +2
Query: 425 PVIFCEAVAIYGLITAIVLSGMLEKYSEP---FTSVSVKQQNWMAGYVMFGAGLAVGLV 592
PV+ + IYGLI A+++S + ++P F + G AG+A+G+V
Sbjct: 59 PVVMAGVLGIYGLIIAVIISTGINPKAKPYFLFDGYAHLSSGLACGLAGLAAGMAIGIV 117
Score = 29.5 bits (63), Expect = 3.7
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +2
Query: 428 VIFCEAVAIYGLITAIVLS 484
+IF EA+A+YGLI I+LS
Sbjct: 139 LIFAEALALYGLIVGIILS 157
>02_04_0181 -
20705307-20705439,20705991-20706037,20706181-20706229,
20706685-20707055
Length = 199
Score = 32.7 bits (71), Expect = 0.40
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = +2
Query: 425 PVIFCEAVAIYGLITAIVLSGMLEKYSEP---FTSVSVKQQNWMAGYVMFGAGLAVGLV 592
PV+ + IYGLI A+++S + ++P F + G AG+A+G+V
Sbjct: 60 PVVMAGVLGIYGLIIAVIISTGINPKAKPYFLFDGYAHLSSGLACGLAGLAAGMAIGIV 118
Score = 29.5 bits (63), Expect = 3.7
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +2
Query: 428 VIFCEAVAIYGLITAIVLS 484
+IF EA+A+YGLI I+LS
Sbjct: 172 LIFAEALALYGLIVGIILS 190
>01_07_0267 + 42410174-42410252,42410679-42411097
Length = 165
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = +2
Query: 425 PVIFCEAVAIYGLITAIVLSGMLEKYSEPFTSV--SVKQQNWMA-GYVMFGAGLAVGLV 592
PV+ + IYGLI A++++ + + P+ SV +A G AGLA+G+V
Sbjct: 58 PVVMAGVLGIYGLIIAVIITTGINPTAMPYYHFDGSVHLAAGLATGLCALAAGLAIGVV 116
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 29.1 bits (62), Expect = 4.9
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 18 HYRESLRFALRFEFSCQGKNRAKKGRPFRD 107
H+RE+ F + F+ C + K +PF+D
Sbjct: 199 HFREASNFLMPFKLKCPERRLQMKKKPFKD 228
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,638,214
Number of Sequences: 37544
Number of extensions: 491925
Number of successful extensions: 1399
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1396
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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