Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_G17
         (933 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    34   0.033
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.31 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   5.0  
SPAC4G8.02c |sss1||translocon gamma subunit Sss1|Schizosaccharom...    27   5.0  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    23   9.8  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.9 bits (74), Expect = 0.033
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = +2

Query: 824 PPPPRGXXXLGXPPPPXPP 880
           PPPP G    G PPPP PP
Sbjct: 764 PPPPPGVAGAGPPPPPPPP 782



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
 Frame = +2

Query: 824 PPPPRGXXXLGXPPPPXPP--XNXXPPXP 904
           P PP      G PPPP PP      PP P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 824 PPPPRGXXXLGXPPPPXPP 880
           PPPP      G  PPP PP
Sbjct: 762 PPPPPPPGVAGAGPPPPPP 780



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 826 PPXXXGXGFGXPPXPXPPP 882
           PP     G G PP P PPP
Sbjct: 765 PPPPGVAGAGPPPPPPPPP 783


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +2

Query: 824 PPPPRGXXXLGXPPPPXPP 880
           PPPP G      PPPP PP
Sbjct: 12  PPPPPGFEPPSQPPPPPPP 30



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -1

Query: 795 PPPPPPXXXKKKKXK 751
           PPPPPP   KK+K K
Sbjct: 25  PPPPPPGYVKKRKNK 39



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +2

Query: 854 GXPPPPXPPXNXXPP 898
           G PPPP PP    PP
Sbjct: 7   GNPPPPPPPPGFEPP 21


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 13/35 (37%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
 Frame = +2

Query: 824 PPPPRGXXXLGXPPPPXPPXN--XXPPXPXXXXXG 922
           PPPPR     G  PPP         PP P     G
Sbjct: 363 PPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPG 397


>SPAC4G8.02c |sss1||translocon gamma subunit
           Sss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 70

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = +3

Query: 198 PDRKEFQKIAIATAXXXXXXXXXXXXXKLXHIP 296
           PDRKEF  I+ A A             KL HIP
Sbjct: 29  PDRKEFLSISKAVATGFVLMGLIGYIIKLIHIP 61


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 22.6 bits (46), Expect(2) = 9.8
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 833 PRGXXXLGXPPPPXPP 880
           P+    L  PPPP PP
Sbjct: 229 PKQADPLPAPPPPPPP 244



 Score = 21.0 bits (42), Expect(2) = 9.8
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +2

Query: 860 PPPPXPPXNXXPP 898
           P PP PP    PP
Sbjct: 236 PAPPPPPPPTLPP 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,661,313
Number of Sequences: 5004
Number of extensions: 45656
Number of successful extensions: 200
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)