Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_G17
         (933 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    29   0.060
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   6.9  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   9.2  

>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 29.1 bits (62), Expect = 0.060
 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +1

Query: 88  TIV*IINL-IMDQIAKFVEPGQAIR*GLHQISEKMHKTLIGKNSKRL 225
           TI+ +IN+   D I+KF++    ++  LH I ++ H  +IGK  K L
Sbjct: 10  TILALINVKAQDDISKFLKDRPYVQKQLHCILDRGHCDVIGKKIKEL 56


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 216 GILSYQGFVHLLTNLMESLANCLPR 142
           GI  Y G   +++ L ESL++  PR
Sbjct: 420 GIGGYNGLPTVMSGLDESLSDVTPR 444


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 371 HGVVKHSPHIIIFIYKQNRYLVLFP 445
           +  V H P III   K ++ L ++P
Sbjct: 136 NNTVIHQPRIIIIDLKTDKILRIYP 160


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,421
Number of Sequences: 438
Number of extensions: 5534
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30476628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)