Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_G16
         (910 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyce...    40   4e-04
SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein L24|Schizosac...    40   4e-04
SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi...    29   0.91 
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    26   6.4  

>SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 149

 Score = 40.3 bits (90), Expect = 4e-04
 Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
 Frame = +3

Query: 81  KIGLCAYSGYKIYPGHGQDHGLXVDGKTFTFLNSKCEXRPFDEEESSVK*XGLSW---YR 251
           K+ +C++SG K+YPG G+   +  D K F F+N K E   F + ++  +   LSW   YR
Sbjct: 2   KVEVCSFSGSKVYPGAGRLF-VRGDNKVFRFVNKKSESL-FLQRKNPRR---LSWTVLYR 56

Query: 252 RXFKKG 269
           R  KKG
Sbjct: 57  RMHKKG 62


>SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein
           L24|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 149

 Score = 40.3 bits (90), Expect = 4e-04
 Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
 Frame = +3

Query: 81  KIGLCAYSGYKIYPGHGQDHGLXVDGKTFTFLNSKCEXRPFDEEESSVK*XGLSW---YR 251
           K+ +C++SG K+YPG G+   +  D K F F+N K E   F + ++  +   LSW   YR
Sbjct: 2   KVEVCSFSGSKVYPGAGRLF-VRGDNKVFRFVNKKSESL-FLQRKNPRR---LSWTVLYR 56

Query: 252 RXFKKG 269
           R  KKG
Sbjct: 57  RMHKKG 62


>SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 29.1 bits (62), Expect = 0.91
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 81  KIGLCAYSGYKIYPGHGQDHGLXVDGKTFTFLNSKC 188
           ++  C +    +YPGHG    +  D K F F  SKC
Sbjct: 2   RVHTCYFCSGPVYPGHGIMF-VRNDSKVFRFCRSKC 36


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 728 LFWXNLGCHCFILXTIYNLAI 790
           L W NLG H  IL  I NL++
Sbjct: 416 LSWFNLGSHGLILANILNLSL 436


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,447,877
Number of Sequences: 5004
Number of extensions: 36550
Number of successful extensions: 51
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)