Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_G15
         (1060 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.071
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    33   0.090
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.21 
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    29   0.83 
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    29   1.5  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   4.5  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect(2) = 0.071
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = +3

Query: 855 PLAPPPXRXTXPXTSPXPPLXPRXPPLP 938
           P APP      P   P PP  P  PPLP
Sbjct: 433 PSAPPSLPMGAPAAPPLPPSAPIAPPLP 460



 Score = 29.5 bits (63), Expect = 0.83
 Identities = 16/58 (27%), Positives = 20/58 (34%)
 Frame = +3

Query: 855  PLAPPPXRXTXPXTSPXPPLXPRXPPLPXXSRXXCTXPXPXSXNHTXXIXLVXRPXPA 1028
            P  PPP R     + P PP     PP P       T   P   + +  +     P PA
Sbjct: 337  PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPA 394



 Score = 27.5 bits (58), Expect = 3.4
 Identities = 13/38 (34%), Positives = 15/38 (39%)
 Frame = +3

Query: 861 APPPXRXTXPXTSPXPPLXPRXPPLPXXSRXXCTXPXP 974
           A PP   + P   P P   P  PPLP  +      P P
Sbjct: 445 AAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAP 482



 Score = 21.4 bits (43), Expect(2) = 0.071
 Identities = 8/23 (34%), Positives = 9/23 (39%)
 Frame = +3

Query: 666 PPPPXXPPXXTPHXPXXRXXAXP 734
           P PP  PP   P  P     + P
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLP 440


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 32.7 bits (71), Expect = 0.090
 Identities = 17/31 (54%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -1

Query: 937 GRGGXRGXRGGXGXVXGXVXRXG-GGARGXR 848
           GRGG  G RGG G   G     G GGARG R
Sbjct: 17  GRGGFNGGRGGFGGGRGGARGGGRGGARGGR 47



 Score = 31.5 bits (68), Expect = 0.21
 Identities = 15/28 (53%), Positives = 15/28 (53%)
 Frame = -1

Query: 937 GRGGXRGXRGGXGXVXGXVXRXGGGARG 854
           GRGG RG RGG     G      GGARG
Sbjct: 10  GRGGSRGGRGGFNGGRGGFGGGRGGARG 37



 Score = 30.7 bits (66), Expect = 0.36
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = -1

Query: 937 GRGGXRGXRGGXGXVXGXVXRXGGGARGXR 848
           GRGG RG RGG G   G      GG  G +
Sbjct: 39  GRGGARGGRGGRGGARGGRGGSSGGRGGAK 68



 Score = 28.7 bits (61), Expect = 1.5
 Identities = 14/29 (48%), Positives = 14/29 (48%)
 Frame = -1

Query: 934 RGGXRGXRGGXGXVXGXVXRXGGGARGXR 848
           RGG  G RGG G   G     GGG  G R
Sbjct: 8   RGGRGGSRGGRGGFNGGRGGFGGGRGGAR 36



 Score = 27.1 bits (57), Expect = 4.5
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -1

Query: 937 GRGGXRGXRGGXGXVXGXVXRXGGGAR 857
           GRGG  G RGG G   G      GGA+
Sbjct: 46  GRGGRGGARGGRGGSSGGRGGAKGGAK 72


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 31.5 bits (68), Expect = 0.21
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
 Frame = +3

Query: 864  PPPXRXTXPX-TSPXPPLXPRXPPLPXXSRXXCTXPXPXSXNHTXXIXLVXRPXPAPFST 1040
            PP    + P  TSP  PL  R PP+P  S      P P +      +     P P P ST
Sbjct: 991  PPSAPLSKPVSTSPAAPLA-RVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTST 1049

Query: 1041 THXP 1052
               P
Sbjct: 1050 PPVP 1053


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 29.5 bits (63), Expect = 0.83
 Identities = 16/30 (53%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = -1

Query: 937 GRGGXRGXRGGXGXVXGXVXR--XGGGARG 854
           GRGG RG RGG     G   R   GGG+RG
Sbjct: 139 GRGGFRGGRGGSRGGFGGNSRGGFGGGSRG 168



 Score = 26.6 bits (56), Expect = 5.9
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = -1

Query: 937 GRGGXRGXRGGXGXVXGXVXRXGGGARG 854
           GRGG  G RGG G   G     GG +RG
Sbjct: 136 GRGGRGGFRGGRGGSRGG---FGGNSRG 160


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 30/128 (23%), Positives = 35/128 (27%), Gaps = 9/128 (7%)
 Frame = +1

Query: 562 PPRXLAHLEXFHXXTPXXPXXPXRXXPPPXX---PXNXXPPPXX---PLXKXPTXPVXXX 723
           PP  + H    H   P     P    PPP     P    PPP     P    P  P+   
Sbjct: 208 PPPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHE 267

Query: 724 MXSXXXXXXLX---AAXXPPPXXXXSXXPXSXLXIXPPPXXSTXTAXLWXPPPXXXXXPP 894
                    +        PPP       P   +   PPP           PPP       
Sbjct: 268 PGEHMPPPPMHHEPGEHMPPPPMHHE--PGEHM---PPPPMHHEPGEHMPPPPMHHEPGE 322

Query: 895 XLPPPLXH 918
            +PPP  H
Sbjct: 323 HMPPPPMH 330



 Score = 26.6 bits (56), Expect = 5.9
 Identities = 29/125 (23%), Positives = 34/125 (27%), Gaps = 9/125 (7%)
 Frame = +1

Query: 562 PPRXLAHLEXFHXXTPXXPXXPXRXXPPPXX---PXNXXPPPXX---PLXKXPTXPVXXX 723
           PP  + H    H   P     P    PPP     P    PPP     P    P  P+   
Sbjct: 221 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHE 280

Query: 724 MXSXXXXXXLX---AAXXPPPXXXXSXXPXSXLXIXPPPXXSTXTAXLWXPPPXXXXXPP 894
                    +        PPP       P   +   PPP           PPP       
Sbjct: 281 PGEHMPPPPMHHEPGEHMPPPPMHHE--PGEHM---PPPPMHHEPGEHMPPPPMHHEPGE 335

Query: 895 XLPPP 909
            +PPP
Sbjct: 336 HMPPP 340


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +3

Query: 849 RXPLAPPPXRXTXPXTSPX--PPLXPRXPPLP 938
           R P + PP R + P  SP   PP+  + PP+P
Sbjct: 138 RPPTSAPP-RPSIPPPSPASAPPIPSKAPPIP 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,985,277
Number of Sequences: 5004
Number of extensions: 24093
Number of successful extensions: 126
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 557214894
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)