Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_G13
         (863 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80220-5|CAB02308.1|  493|Caenorhabditis elegans Hypothetical pr...    28   9.9  
X83888-1|CAA58765.1|  493|Caenorhabditis elegans beta-1 subunit ...    28   9.9  
U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of pr...    28   9.9  
U81144-1|AAB39358.1|  493|Caenorhabditis elegans non-alpha nicot...    28   9.9  
U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion...    28   9.9  
U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion...    28   9.9  

>Z80220-5|CAB02308.1|  493|Caenorhabditis elegans Hypothetical
           protein T08G11.5 protein.
          Length = 493

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -1

Query: 482 SHVLSXVIALILWITVLPPLSELIPLAA 399
           S +LS V+ L+L   +LPP S  IPL A
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMA 294


>X83888-1|CAA58765.1|  493|Caenorhabditis elegans beta-1 subunit of
           nicotinic acetylcholinereceptor protein.
          Length = 493

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -1

Query: 482 SHVLSXVIALILWITVLPPLSELIPLAA 399
           S +LS V+ L+L   +LPP S  IPL A
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMA 294


>U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of
            presynaptic activity protein.
          Length = 1409

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
 Frame = +3

Query: 558  ERASQKSTLKSXVAKPDRTIKIPG-VSPXKAPLXRSPGSDPAAYXIPVXLSPFGXRGXLX 734
            +  +  ST    +A+  R+  +P  V P +AP    P  +P     P  + P G R    
Sbjct: 943  QNVTPTSTNNHEIAQSTRSPALPPPVPPREAPPI--PKRNPPPLGAPPKV-PEGARAPPP 999

Query: 735  IPPRXXYXTSXVXSFPSN 788
            +PPR    T+ V   P N
Sbjct: 1000 LPPRPKVKTTAVDETPQN 1017


>U81144-1|AAB39358.1|  493|Caenorhabditis elegans non-alpha
           nicotinic acetylcholinereceptor subunit precursor
           protein.
          Length = 493

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -1

Query: 482 SHVLSXVIALILWITVLPPLSELIPLAA 399
           S +LS V+ L+L   +LPP S  IPL A
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMA 294


>U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion
            defective protein3, isoform b protein.
          Length = 1408

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
 Frame = +3

Query: 558  ERASQKSTLKSXVAKPDRTIKIPG-VSPXKAPLXRSPGSDPAAYXIPVXLSPFGXRGXLX 734
            +  +  ST    +A+  R+  +P  V P +AP    P  +P     P  + P G R    
Sbjct: 943  QNVTPTSTNNHEIAQSTRSPALPPPVPPREAPPI--PKRNPPPLGAPPKV-PEGARAPPP 999

Query: 735  IPPRXXYXTSXVXSFPSN 788
            +PPR    T+ V   P N
Sbjct: 1000 LPPRPKVKTTAVDETPQN 1017


>U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion
            defective protein3, isoform a protein.
          Length = 1409

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
 Frame = +3

Query: 558  ERASQKSTLKSXVAKPDRTIKIPG-VSPXKAPLXRSPGSDPAAYXIPVXLSPFGXRGXLX 734
            +  +  ST    +A+  R+  +P  V P +AP    P  +P     P  + P G R    
Sbjct: 943  QNVTPTSTNNHEIAQSTRSPALPPPVPPREAPPI--PKRNPPPLGAPPKV-PEGARAPPP 999

Query: 735  IPPRXXYXTSXVXSFPSN 788
            +PPR    T+ V   P N
Sbjct: 1000 LPPRPKVKTTAVDETPQN 1017


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,362,840
Number of Sequences: 27780
Number of extensions: 275656
Number of successful extensions: 579
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)