Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_G11
(886 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit... 84 2e-17
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces... 29 0.67
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.67
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 0.88
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 1.2
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 1.5
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 28 2.0
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac... 27 3.6
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo... 27 3.6
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 4.7
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 26 6.2
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 26 8.2
>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 84.2 bits (199), Expect = 2e-17
Identities = 42/108 (38%), Positives = 64/108 (59%), Gaps = 3/108 (2%)
Frame = +3
Query: 45 PREYSIWYAEYKYPEELAK-VFMXCNLITGMFXRLDKMRKQAFASVCLFGEDNNSTISGV 221
P YS+W +Y YPE+L + VFM NLI G F RL+ RK F + GE+ ++TI+G
Sbjct: 291 PENYSVWKVDYSYPEDLKQPVFMTNNLIGGFFQRLEASRKYIFGCCVVIGENGDNTITGA 350
Query: 222 WVWRGKELV--FPLSSDWQVDYXSYDWXKLDXSSEETKKLVQDYFSWN 359
+V +G + V F ++ DW SY + KLD + E K ++D ++W+
Sbjct: 351 FVIKGHDYVPAFDVAPDW----GSYTFTKLDINKPEDKAFIEDAWAWD 394
>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 720
Score = 29.5 bits (63), Expect = 0.67
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = +1
Query: 514 FSXLSSIYTIFIKTSXINDFQSPCIHXCTAENHPAXA*KNDNTCIY 651
FS S +T FIK N F P + CT E + ND C+Y
Sbjct: 325 FSAQESAWTDFIK----NGFDHPILPTCTQETVYSLLTGNDTACVY 366
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.5 bits (63), Expect = 0.67
Identities = 14/40 (35%), Positives = 15/40 (37%), Gaps = 4/40 (10%)
Frame = +2
Query: 740 PPXXPPXPXPXXPXP----PPXXPPFXGGPIXVPXXXXXP 847
PP PP P P P PP PP P+ P P
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228
Score = 25.8 bits (54), Expect = 8.2
Identities = 12/34 (35%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Frame = +2
Query: 731 PXXPPXX-PPXPXPXXPXPPPXXPPFXGGPIXVP 829
P PP PP P P PP P P+ P
Sbjct: 1209 PVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAP 1242
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.1 bits (62), Expect = 0.88
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +2
Query: 755 PXPXPXXPXPPPXXPPFXGGPIXVP 829
P P P PPP PP GP P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAP 1731
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +2
Query: 731 PXXPPXXPPXPXPXXPXPPPXXPP 802
P PP PP P P PP PP
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPP 29
Score = 27.5 bits (58), Expect = 2.7
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +2
Query: 740 PPXXPPXPXPXXPXPPPXXPP 802
PP PP P P PP PP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPP 25
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/40 (35%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Frame = +2
Query: 731 PXXPPXXPPXPXPXXPXPPPXXPPF-XGGPIXVPXXXXXP 847
P PP PP P P P PP PI P P
Sbjct: 425 PSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMP 464
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = +2
Query: 731 PXXPPXXPPXPXPXXPXPPPXXPPFXGGPI 820
P P PP P P P PPP P P+
Sbjct: 460 PAGMPAAPPLP-PAAPAPPPAPAPAPAAPV 488
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.9 bits (59), Expect = 2.0
Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Frame = +2
Query: 731 PXXPPXXPPXPXPXXPXPPPXXPPFXG-GPIXVP 829
P P PP P P PPP P G GP P
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 27.5 bits (58), Expect = 2.7
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +2
Query: 740 PPXXPPXPXPXXPXPPPXXPP 802
PP PP P PPP PP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPP 781
Score = 27.1 bits (57), Expect = 3.6
Identities = 20/71 (28%), Positives = 22/71 (30%), Gaps = 1/71 (1%)
Frame = +2
Query: 662 SRDPYLIXTSXCVXKHVFXIXD*PXXPPXXPPXPXPXX-PXPPPXXPPFXGGPIXVPXXX 838
S P L S V + + P PP P P P P P P GGP P
Sbjct: 709 SPSPLLPDVSDTVEEQQKLLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768
Query: 839 XXPXXXXGPXP 871
P P
Sbjct: 769 GVAGAGPPPPP 779
Score = 27.1 bits (57), Expect = 3.6
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +2
Query: 740 PPXXPPXPXPXXPXPPPXXPP 802
PP PP P PPP PP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPP 783
>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 27.1 bits (57), Expect = 3.6
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = -1
Query: 229 HTHTPEMVELLSS---PNRQTDAKACLRILSNLWNIPVIRL 116
+ H P V+ L+ PN + CL IL WN PV+ L
Sbjct: 80 YPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWN-PVLNL 119
>SPCC126.09 |||vacuolar membrane zinc transporter
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 418
Score = 27.1 bits (57), Expect = 3.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 277 STCQSDDSGNTSSFPRHTHTPEMVELLSS 191
S C + + SSFP H+ TP+ +E + S
Sbjct: 233 SNCDCECHAHFSSFPTHSGTPDDIEHIHS 261
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/24 (41%), Positives = 10/24 (41%)
Frame = +2
Query: 731 PXXPPXXPPXPXPXXPXPPPXXPP 802
P PP P P PPP PP
Sbjct: 221 PEIPPTYTPKQADPLPAPPPPPPP 244
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -2
Query: 804 KGGXXGGGXGXXGXGXGGXXGGXXG 730
+GG GGG G G GG G G
Sbjct: 32 RGGARGGGRGGARGGRGGRGGARGG 56
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 25.8 bits (54), Expect = 8.2
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +3
Query: 270 QVDYXSYDWXKLD 308
QVDY SYDW + D
Sbjct: 298 QVDYLSYDWKETD 310
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,958,178
Number of Sequences: 5004
Number of extensions: 54195
Number of successful extensions: 214
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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