Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_G06
(965 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 37 0.004
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 33 0.080
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 32 0.11
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 30 0.42
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 0.98
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 1.3
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.3
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 28 1.7
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 28 1.7
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 26 4.7
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 27 5.2
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 6.9
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 26 9.1
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 26 9.1
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 37.1 bits (82), Expect = 0.004
Identities = 16/28 (57%), Positives = 16/28 (57%)
Frame = +3
Query: 639 PPPPPPPXXGGXGAPPXXLXPXPPLPPP 722
PPPPPPP G G PP PP PPP
Sbjct: 762 PPPPPPPGVAGAGPPP------PPPPPP 783
Score = 32.7 bits (71), Expect = 0.080
Identities = 15/31 (48%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Frame = +2
Query: 644 PPPPPXXGGXRGPXXXP-----XPXPPPPPP 721
PPP P GG P P P PPPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 30.7 bits (66), Expect = 0.32
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +1
Query: 421 PPPPXXPXXPPPXPXXXXSPXPGXXAXAPXLPXTPP 528
PPPP P P P P P P P PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768
Score = 30.7 bits (66), Expect = 0.32
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = +1
Query: 415 PXPPPPXXPXXPPPXPXXXXSPXPGXXAXAPXLPXTPP 528
P PPP PPP P P PG P P PP
Sbjct: 750 PVPPPAPIMGGPPPPP-----PPPGVAGAGPPPPPPPP 782
Score = 29.9 bits (64), Expect = 0.56
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +2
Query: 629 LXXXPPPPPPXXGGXRGPXXXPXPXPPPPP 718
L PPPPPP P P P PPP P
Sbjct: 728 LLKSPPPPPPAV-IVPTPAPAPIPVPPPAP 756
Score = 29.1 bits (62), Expect = 0.98
Identities = 15/37 (40%), Positives = 15/37 (40%), Gaps = 6/37 (16%)
Frame = +2
Query: 629 LXXXPPPPPPXXGGXRGPXXXPXPXP------PPPPP 721
L PPPPP P P P P PPPPP
Sbjct: 729 LKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765
Score = 28.3 bits (60), Expect = 1.7
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3
Query: 246 GGPPPPPXPXXXAG 287
GGPPPPP P AG
Sbjct: 759 GGPPPPPPPPGVAG 772
Score = 27.1 bits (57), Expect = 4.0
Identities = 25/75 (33%), Positives = 26/75 (34%), Gaps = 2/75 (2%)
Frame = +3
Query: 84 LXFPPPXLXPPPXFYXP-PFPXP-PXPPXAXTXXXXXXXXXXXXXXXXXXXXXXXAGGPP 257
L PPP PPP P P P P P PP A AG P
Sbjct: 729 LKSPPP---PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGV----------AGAGP 775
Query: 258 PPPXPXXXAGXXGGA 302
PPP P A GG+
Sbjct: 776 PPPPPPPPAVSAGGS 790
Score = 27.1 bits (57), Expect = 4.0
Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Frame = +3
Query: 639 PPPPPPPXXGGXGAPPXX--LXPXPPLPPP 722
P PPP P GG PP + P PPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 26.2 bits (55), Expect = 6.9
Identities = 14/35 (40%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Frame = +2
Query: 419 PPXHPX---PPXXPPPPPXXXXLPPPGXXRXPXXS 514
PP P PP PPPP PPP P S
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVS 786
Score = 26.2 bits (55), Expect = 6.9
Identities = 10/26 (38%), Positives = 10/26 (38%)
Frame = +2
Query: 641 PPPPPPXXGGXRGPXXXPXPXPPPPP 718
PPPPPP P P P P
Sbjct: 778 PPPPPPAVSAGGSRYYAPAPQAEPEP 803
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 32.7 bits (71), Expect = 0.080
Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Frame = +2
Query: 641 PPPPPPXXGGXRGPXXXP---XPXPPPPPP 721
PPPPPP G P PPPPPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
Score = 32.3 bits (70), Expect = 0.11
Identities = 15/32 (46%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Frame = +3
Query: 639 PPPPPPPXXGGXGAPP----XXLXPXPPLPPP 722
PPPPPPP G PP PP PPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPP 342
Score = 32.3 bits (70), Expect = 0.11
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Frame = +3
Query: 639 PPPPPPPXXGGXGA---PPXXLXPXPPLPP 719
PPPPPPP G+ PP PP PP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
Score = 29.1 bits (62), Expect = 0.98
Identities = 15/42 (35%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Frame = +1
Query: 415 PXPPPPXXP-XXPPPXPXXXXSPXPGXXAXAPXLPXTPPTXP 537
P P PP P PP P P AP LP + P P
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAP 457
Score = 28.3 bits (60), Expect = 1.7
Identities = 14/33 (42%), Positives = 14/33 (42%), Gaps = 5/33 (15%)
Frame = +3
Query: 639 PPPPPPPXXGGXGAPPXXL-----XPXPPLPPP 722
PPPPPP G P L PP PPP
Sbjct: 361 PPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPP 393
Score = 27.9 bits (59), Expect = 2.3
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +3
Query: 639 PPPPPPPXXGGXGAPPXXLXPXPPLPP 719
PPP PPP G +PP P P+ P
Sbjct: 253 PPPIPPPSNGTVSSPPN--SPPRPIAP 277
Score = 27.1 bits (57), Expect = 4.0
Identities = 12/38 (31%), Positives = 12/38 (31%)
Frame = +1
Query: 415 PXPPPPXXPXXPPPXPXXXXSPXPGXXAXAPXLPXTPP 528
P PP P PP P P P P PP
Sbjct: 421 PSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPP 458
Score = 26.2 bits (55), Expect = 6.9
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +2
Query: 644 PPPPPXXGGXRGPXXXPXPXPPPPPP 721
PP PP R P P P PPP
Sbjct: 230 PPIPPSIPSSRPPERVPSLSAPAPPP 255
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 32.3 bits (70), Expect = 0.11
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = +2
Query: 641 PPPPPPXXGGXRGPXXXPXPXPPPPPP 721
PPPPPP P P PPPPPP
Sbjct: 9 PPPPPPP------PGFEPPSQPPPPPP 29
Score = 31.5 bits (68), Expect = 0.18
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +3
Query: 96 PPXLXPPPXFYXPPFPXPPXPP 161
PP PPP F P P PP PP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPP 30
Score = 30.3 bits (65), Expect = 0.42
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +2
Query: 644 PPPPPXXGGXRGPXXXPXPXPPPPP 718
PPPPP G P P PPPPP
Sbjct: 9 PPPPPPPPGFEPP---SQPPPPPPP 30
Score = 29.9 bits (64), Expect = 0.56
Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Frame = +2
Query: 419 PPXHPXPPXXPP---PPPXXXXLPPPG 490
PP +P PP PP PP PPPG
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPG 31
Score = 28.3 bits (60), Expect = 1.7
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +3
Query: 639 PPPPPPPXXGGXGAPPXXLXPXPPLP 716
PPPPPPP G P P PP P
Sbjct: 9 PPPPPPPP----GFEPPSQPPPPPPP 30
Score = 27.5 bits (58), Expect = 3.0
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +2
Query: 437 PPXXPPPPPXXXXLPPPGXXRXP 505
PP PPPPP PP P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPP 27
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 30.3 bits (65), Expect = 0.42
Identities = 17/42 (40%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = -1
Query: 536 GXVGGVXGRXGAXAXXPGXGEXXXXGXGGGXXGXXGG-GGXG 414
G GG G G PG G GGG G GG GG G
Sbjct: 228 GGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHG 269
Score = 29.5 bits (63), Expect = 0.74
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = -2
Query: 721 GGGRGGXGXRXXGGAPXPPXXGGGGGGG 638
GGG GG G G P P GG GG G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFG 214
Score = 29.5 bits (63), Expect = 0.74
Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Frame = -1
Query: 539 WGXVGGVXGRXGAXAXXPGXGEXXXXGXGGGXXGXXGG-GGXG 414
+G G G G PG E G GGG G GG GG G
Sbjct: 213 FGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFG 255
Score = 29.5 bits (63), Expect = 0.74
Identities = 17/42 (40%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = -1
Query: 536 GXVGGVXGRXGAXAXXPGXGEXXXXGXGGGXXGXXGG-GGXG 414
G GG G G PG G GGG G GG GG G
Sbjct: 221 GGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFG 262
Score = 27.9 bits (59), Expect = 2.3
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -2
Query: 721 GGGRGGXGXRXXGGAPXPPXXGGGGGG 641
GGG GG G G P GGG GG
Sbjct: 241 GGGPGGFGGGLGGFGGGPGGFGGGPGG 267
Score = 25.8 bits (54), Expect = 9.1
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -2
Query: 718 GGRGGXGXRXXGGAPXPPXXGGGGGG 641
GG GG G G P GGG GG
Sbjct: 221 GGHGGFGGGPGGFEGGPGGFGGGPGG 246
Score = 25.8 bits (54), Expect = 9.1
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -3
Query: 483 GGRXXXXGGGGGXXGGXGW 427
GG GGG G GG GW
Sbjct: 255 GGGPGGFGGGPGGHGGPGW 273
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.1 bits (62), Expect = 0.98
Identities = 14/41 (34%), Positives = 15/41 (36%)
Frame = +1
Query: 415 PXPPPPXXPXXPPPXPXXXXSPXPGXXAXAPXLPXTPPTXP 537
P PP P PP S P A AP +P P P
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIP 168
Score = 28.3 bits (60), Expect = 1.7
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = +3
Query: 639 PPPPPPPXXGGXGAPPXXLXPXPPLPPP 722
P P PP PP P P +PPP
Sbjct: 125 PSAPAPPTPQSELRPPTSAPPRPSIPPP 152
Score = 26.6 bits (56), Expect = 5.2
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Frame = +1
Query: 412 RPXPPPPXXPXXPPPXPXXXXSPXPGXXAXAPXLPXT--PPTXP 537
RP P P PPP P + P + AP +P + PP P
Sbjct: 138 RPPTSAPPRPSIPPPSP----ASAPPIPSKAPPIPSSLPPPAQP 177
Score = 25.8 bits (54), Expect = 9.1
Identities = 13/34 (38%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Frame = +2
Query: 419 PPXHPX--PPXXPPPPPXXXXLPPPGXXRXPXXS 514
PP P PP PP LPPP P S
Sbjct: 150 PPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKS 183
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.7 bits (61), Expect = 1.3
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +3
Query: 639 PPPPPPPXXGGXGAPPXXLXPXPPLPPP 722
PPPPP APP P P PPP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGP-PSAPPP 1733
Score = 28.3 bits (60), Expect = 1.7
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = +1
Query: 415 PXPPPPXXPXXPPPXPXXXXSPXPGXXAXAPXLP-XTPPTXP 537
P PPPP P PP P P A P LP + P+ P
Sbjct: 1705 PTPPPP--PMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744
Score = 26.6 bits (56), Expect = 5.2
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = +1
Query: 427 PPXXPXXPPPXPXXXXSPXPGXXAXAPXLPXTPPTXP 537
PP PP P P P AP +P PP+ P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPS----APPMPAGPPSAP 1731
Score = 25.8 bits (54), Expect = 9.1
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +3
Query: 642 PPPPPPXXGGXGAPPXXLXPXPPLPP 719
P PP APP P PP PP
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPP 1711
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.7 bits (61), Expect = 1.3
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = +1
Query: 415 PXPPPPXXPXXPPPXPXXXXSPXPGXXAXAPXLPXTPPTXP 537
P PPP P P P P P P A AP +P P
Sbjct: 1209 PVPPPSTAP--PVPTPSAGLPPVPVPTAKAPPVPAPSSEAP 1247
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 28.3 bits (60), Expect = 1.7
Identities = 16/49 (32%), Positives = 17/49 (34%), Gaps = 7/49 (14%)
Frame = +1
Query: 415 PXPPPPXXPXXPPPXPXXXXSPXP-------GXXAXAPXLPXTPPTXPQ 540
P PPPP P PP P P G P P TP P+
Sbjct: 236 PAPPPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPPPPATPSQPPR 284
Score = 25.8 bits (54), Expect = 9.1
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +3
Query: 630 YXXPPPPPPP 659
Y PPPPPPP
Sbjct: 187 YNPPPPPPPP 196
Score = 25.8 bits (54), Expect = 9.1
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +2
Query: 692 PXPXPPPPPP 721
P P PPPPPP
Sbjct: 234 PLPAPPPPPP 243
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 28.3 bits (60), Expect = 1.7
Identities = 16/39 (41%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Frame = -1
Query: 527 GGVXG-RXGAXAXXPGXGEXXXXGXGGGXXGXXGGGGXG 414
GG G R G G G G GGG G GGG G
Sbjct: 138 GGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRG 176
Score = 25.8 bits (54), Expect = 9.1
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -2
Query: 721 GGGRGGXGXRXXGGAPXPPXXGGGGG 644
GG RGG G GG G GGG
Sbjct: 148 GGSRGGFGGNSRGGFGGGSRGGFGGG 173
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.8 bits (54), Expect = 9.1
Identities = 18/87 (20%), Positives = 22/87 (25%)
Frame = +3
Query: 39 ENSFKEF*NGGELXXLXFPPPXLXPPPXFYXPPFPXPPXPPXAXTXXXXXXXXXXXXXXX 218
EN + N ++ P P P P PP P +
Sbjct: 874 ENKAETVSNNSKITNFDIPNDATSLPTIITHPTPPPPPPLPVKTSLNTFSHPDSVNIVAN 933
Query: 219 XXXXXXXXAGGPPPPPXPXXXAGXXGG 299
PPPPP P GG
Sbjct: 934 DTSVAGVMPAFPPPPPPPPPLVSAAGG 960
Score = 23.4 bits (48), Expect(2) = 6.0
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +2
Query: 698 PXPPPPPP 721
P PPPPPP
Sbjct: 946 PPPPPPPP 953
Score = 23.0 bits (47), Expect(2) = 4.7
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +2
Query: 437 PPXXPPPPP 463
PP PPPPP
Sbjct: 945 PPPPPPPPP 953
Score = 21.8 bits (44), Expect(2) = 4.7
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +2
Query: 428 HPXPPXXPPPP 460
HP PP PP P
Sbjct: 904 HPTPPPPPPLP 914
Score = 21.0 bits (42), Expect(2) = 6.0
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +2
Query: 641 PPPPPP 658
PPPPPP
Sbjct: 907 PPPPPP 912
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 26.6 bits (56), Expect = 5.2
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +3
Query: 648 PPPPXXGGXGAPPXXLXP 701
PPPP G GAPP P
Sbjct: 129 PPPPAGFGRGAPPPGFRP 146
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.2 bits (55), Expect = 6.9
Identities = 15/35 (42%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Frame = +3
Query: 639 PPPPPP---PXXGGXGAPPXXLXPXPPLPPPXXXT 734
PPPPPP P G A P PP PP T
Sbjct: 1882 PPPPPPMALPKAGPPSAAP--TSALPPAGPPAGAT 1914
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 25.8 bits (54), Expect = 9.1
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -2
Query: 721 GGGRGGXGXRXXGGAPXPPXXGGGGGGG 638
GGGRGG GGA GG GG
Sbjct: 29 GGGRGGARGGGRGGARGGRGGRGGARGG 56
Score = 25.8 bits (54), Expect = 9.1
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = -2
Query: 721 GGGRGGXGXRXXGGAPXPPXXGGGGGGG 638
GG RGG G R GGA GG GG
Sbjct: 41 GGARGGRGGR--GGARGGRGGSSGGRGG 66
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.8 bits (54), Expect = 9.1
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +3
Query: 630 YXXPPPPPPP 659
Y PPPPPPP
Sbjct: 368 YSPPPPPPPP 377
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.145 0.501
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,770,682
Number of Sequences: 5004
Number of extensions: 31010
Number of successful extensions: 558
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 495302128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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