Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_G06
         (965 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    26   0.59 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.78 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   2.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   2.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   7.2  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.8 bits (54), Expect = 0.59
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +2

Query: 692 PXPXPPPPPP 721
           P P PPPPPP
Sbjct: 339 PKPAPPPPPP 348



 Score = 22.6 bits (46), Expect = 5.5
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 639 PPPPPPPXXGGXGA 680
           PPPPPP   G   A
Sbjct: 343 PPPPPPSSSGPDSA 356



 Score = 22.2 bits (45), Expect = 7.2
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 431 PXPPXXPPPPP 463
           P  P  PPPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 21.8 bits (44), Expect = 9.6
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 132 PPFPXPPXPP 161
           PP P PP PP
Sbjct: 338 PPKPAPPPPP 347


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.4 bits (53), Expect = 0.78
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 639  PPPPPPPXXGG 671
            PPPPPPP   G
Sbjct: 1355 PPPPPPPPSSG 1365



 Score = 23.4 bits (48), Expect = 3.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 698  PXPPPPPP 721
            P PPPPPP
Sbjct: 1355 PPPPPPPP 1362


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 639 PPPPPPPXXGG 671
           P PPPPP  GG
Sbjct: 374 PLPPPPPIRGG 384


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +2

Query: 665  GGXRGPXXXPXPXPPPPPP 721
            G  R       P PPPPPP
Sbjct: 1846 GSARNIPVSGSPEPPPPPP 1864


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 9/25 (36%), Positives = 9/25 (36%)
 Frame = +2

Query: 647 PPPPXXGGXRGPXXXPXPXPPPPPP 721
           P  P  G    P   P P  PP  P
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 21.8 bits (44), Expect = 9.6
 Identities = 10/28 (35%), Positives = 11/28 (39%)
 Frame = +3

Query: 639 PPPPPPPXXGGXGAPPXXLXPXPPLPPP 722
           P P   P     G+PP      PP  PP
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 21.8 bits (44), Expect = 9.6
 Identities = 10/18 (55%), Positives = 10/18 (55%), Gaps = 2/18 (11%)
 Frame = +3

Query: 639 PPPPP--PPXXGGXGAPP 686
           PP P   PP  G  GAPP
Sbjct: 39  PPNPSQGPPPGGPPGAPP 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.314    0.145    0.501 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,357
Number of Sequences: 438
Number of extensions: 8129
Number of successful extensions: 29
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31806957
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)