Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_G03
         (908 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.39 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   1.6  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   6.4  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 15/42 (35%), Positives = 16/42 (38%)
 Frame = +2

Query: 782 VPXXPXLXAPNPPLXXPTXCPLXPXXYPP*XPXPXXKPXXPP 907
           VP  P L    PP   P+  P  P   P   P P   P  PP
Sbjct: 417 VPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPP 458


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 20/82 (24%), Positives = 23/82 (28%)
 Frame = +1

Query: 637  PXXSPPAPXPVSXPXXLPXTXSXXLPSGXXXRLSHXSXLXXIXPSAVXRSXPXXAVCXQP 816
            P   PP   P S P   P + S   P      +   S      P     + P       P
Sbjct: 982  PTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAP 1041

Query: 817  PXSXPXXLPPXSXXXSPXXSXP 882
            P   P   PP     S   S P
Sbjct: 1042 PVPIPTSTPPVPKSSSGAPSAP 1063


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/39 (30%), Positives = 15/39 (38%)
 Frame = +1

Query: 601 ETPQDYXXPXFXPXXSPPAPXPVSXPXXLPXTXSXXLPS 717
           E P  Y      P  +PP P P + P     T    +PS
Sbjct: 222 EIPPTYTPKQADPLPAPPPPPPPTLPPQSTNTSQLPMPS 260


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,438,954
Number of Sequences: 5004
Number of extensions: 37562
Number of successful extensions: 82
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)