Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_G03
         (908 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    35   0.070
Z78546-6|CAB54307.1|  642|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z78545-5|CAB01764.2|  642|Caenorhabditis elegans Hypothetical pr...    30   2.0  
L25598-4|AAV58888.1|  737|Caenorhabditis elegans Calpain family ...    29   6.1  
L25598-3|AAM15551.1|  759|Caenorhabditis elegans Calpain family ...    29   6.1  
L25598-2|AAV58887.1|  780|Caenorhabditis elegans Calpain family ...    29   6.1  

>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 35.1 bits (77), Expect = 0.070
 Identities = 16/38 (42%), Positives = 17/38 (44%)
 Frame = +2

Query: 794 PXLXAPNPPLXXPTXCPLXPXXYPP*XPXPXXKPXXPP 907
           P L  P PP+  P  CP  P   PP  P P   P  PP
Sbjct: 41  PPLPCPPPPICPPQFCPPPPMCPPP--PPPPPPPMCPP 76



 Score = 28.7 bits (61), Expect = 6.1
 Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
 Frame = +2

Query: 785 PXXPXLXAPNP-PLXXPTXCPLXPXXYPP*XPXPXXKPXXPP 907
           P  P + AP P P   P  CP  P   PP    P   P  PP
Sbjct: 32  PPPPPMCAPPPLPCPPPPICP--PQFCPPPPMCPPPPPPPPP 71



 Score = 28.3 bits (60), Expect = 8.0
 Identities = 14/42 (33%), Positives = 15/42 (35%)
 Frame = +2

Query: 752 CXXSHLPLXVVPXXPXLXAPNPPLXXPTXCPLXPXXYPP*XP 877
           C    LP    P  P    P PP+  P   P  P   PP  P
Sbjct: 38  CAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPPP 79


>Z78546-6|CAB54307.1|  642|Caenorhabditis elegans Hypothetical
           protein M03B6.3 protein.
          Length = 642

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = +2

Query: 809 PNPPLXXPTXCPLXPXXYPP*XPXPXXKPXXPP 907
           P PP   PT   L    YPP  P P  +P   P
Sbjct: 353 PRPPAPLPTDLQLENLGYPPSPPAPLAQPTPAP 385


>Z78545-5|CAB01764.2|  642|Caenorhabditis elegans Hypothetical
           protein M03B6.3 protein.
          Length = 642

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = +2

Query: 809 PNPPLXXPTXCPLXPXXYPP*XPXPXXKPXXPP 907
           P PP   PT   L    YPP  P P  +P   P
Sbjct: 353 PRPPAPLPTDLQLENLGYPPSPPAPLAQPTPAP 385


>L25598-4|AAV58888.1|  737|Caenorhabditis elegans Calpain family
           protein 1, isoform b protein.
          Length = 737

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -3

Query: 882 GXGXXGGXXXGXRGQXVGX*XGGLGAXSXGXXGTTYSG 769
           G G  GG   G  G   G   GG+G+   G  G  Y+G
Sbjct: 109 GGGGGGGQRQGGGGGGFGDILGGIGSLIGGGGGGQYNG 146


>L25598-3|AAM15551.1|  759|Caenorhabditis elegans Calpain family
           protein 1, isoform d protein.
          Length = 759

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -3

Query: 882 GXGXXGGXXXGXRGQXVGX*XGGLGAXSXGXXGTTYSG 769
           G G  GG   G  G   G   GG+G+   G  G  Y+G
Sbjct: 134 GGGGGGGQRQGGGGGGFGDILGGIGSLIGGGGGGQYNG 171


>L25598-2|AAV58887.1|  780|Caenorhabditis elegans Calpain family
           protein 1, isoform a protein.
          Length = 780

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -3

Query: 882 GXGXXGGXXXGXRGQXVGX*XGGLGAXSXGXXGTTYSG 769
           G G  GG   G  G   G   GG+G+   G  G  Y+G
Sbjct: 155 GGGGGGGQRQGGGGGGFGDILGGIGSLIGGGGGGQYNG 192


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,203,931
Number of Sequences: 27780
Number of extensions: 243687
Number of successful extensions: 602
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)