Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_G02
         (872 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    64   3e-09
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    58   4e-07
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi...    54   5e-06
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    54   6e-06
UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ...    49   2e-04
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    45   0.002
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    42   0.027
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    41   0.047
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    40   0.083
UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1; Lentisp...    34   5.4  
UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1; ...    34   5.4  

>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 64.5 bits (150), Expect = 3e-09
 Identities = 30/38 (78%), Positives = 30/38 (78%)
 Frame = -3

Query: 489 PFXGLLLTCSFLRYPLILWITVLPPLSELIPLAAAERP 376
           P    LLTCSF  YPLILWITVLPPLSEL PLAA ERP
Sbjct: 19  PVLCFLLTCSFRLYPLILWITVLPPLSELTPLAAVERP 56


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 57.6 bits (133), Expect = 4e-07
 Identities = 32/57 (56%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
 Frame = +1

Query: 289 CINESANARGEAVCVLGALPLPRSLTRCARSFGCGERYQL-TQRR*YGYPQNQGIXQ 456
           CI + A AR EAV VL ALPL RS TRC RS GCG      +  R YG PQ QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322


>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
           organisms|Rep: Predicted protein - Nematostella
           vectensis
          Length = 97

 Score = 54.0 bits (124), Expect = 5e-06
 Identities = 30/53 (56%), Positives = 33/53 (62%)
 Frame = +3

Query: 495 RXVKRPRCXRFSIGSAPLTSITKSTLXSEVAKPDRTIKIPGVFPLQAPSCALL 653
           R V+ PR  RFSIGSAPLTSITKS       +  +  K    FPL APSCALL
Sbjct: 42  REVRGPRQSRFSIGSAPLTSITKSDAQISGGETRQDYKDTRRFPLAAPSCALL 94


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 53.6 bits (123), Expect = 6e-06
 Identities = 29/49 (59%), Positives = 31/49 (63%)
 Frame = +3

Query: 507 RPRCXRFSIGSAPLTSITKSTLXSEVAKPDRTIKIPGVFPLQAPSCALL 653
           RPR  RFSIGSAPLTSI KS       +  +  K P  FPL APSCALL
Sbjct: 78  RPRRSRFSIGSAPLTSIAKSDAQISGGETRQDYKDPRRFPLVAPSCALL 126



 Score = 52.8 bits (121), Expect = 1e-05
 Identities = 23/33 (69%), Positives = 26/33 (78%)
 Frame = +1

Query: 313 RGEAVCVLGALPLPRSLTRCARSFGCGERYQLT 411
           R   +C  G +PLPRSLTR ARSFGCGERY+LT
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRLT 58


>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
           root|Rep: Putative uncharacterized protein - Salmonella
           typhimurium
          Length = 127

 Score = 48.8 bits (111), Expect = 2e-04
 Identities = 21/22 (95%), Positives = 21/22 (95%)
 Frame = +2

Query: 560 KIDAXVRGGETRQDYKDTRRFP 625
           KIDA VRGGETRQDYKDTRRFP
Sbjct: 28  KIDAQVRGGETRQDYKDTRRFP 49



 Score = 47.6 bits (108), Expect = 4e-04
 Identities = 27/47 (57%), Positives = 30/47 (63%)
 Frame = +3

Query: 513 RCXRFSIGSAPLTSITKSTLXSEVAKPDRTIKIPGVFPLQAPSCALL 653
           RC RFSIGSAPLTSITK        +  +  K    FPL+APSCALL
Sbjct: 13  RC-RFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALL 58


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 45.2 bits (102), Expect = 0.002
 Identities = 19/19 (100%), Positives = 19/19 (100%)
 Frame = +2

Query: 92  DPDMIRYIDEFGQTTTRMQ 148
           DPDMIRYIDEFGQTTTRMQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 41.5 bits (93), Expect = 0.027
 Identities = 19/20 (95%), Positives = 19/20 (95%)
 Frame = +3

Query: 408 HSKAVIRLSTESGDXAGKNM 467
           HSKAVIRLSTESGD AGKNM
Sbjct: 40  HSKAVIRLSTESGDNAGKNM 59


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 40.7 bits (91), Expect = 0.047
 Identities = 16/17 (94%), Positives = 17/17 (100%)
 Frame = +2

Query: 287 SALMNRPTRGERRFAYW 337
           +ALMNRPTRGERRFAYW
Sbjct: 25  AALMNRPTRGERRFAYW 41


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 39.9 bits (89), Expect = 0.083
 Identities = 19/24 (79%), Positives = 21/24 (87%)
 Frame = -1

Query: 359 ERGSGRAPNTQTASPRALADSLMQ 288
           +R +  APNTQTASPRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348


>UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1;
           Lentisphaera araneosa HTCC2155|Rep: Probable ECF sigma
           factor - Lentisphaera araneosa HTCC2155
          Length = 201

 Score = 33.9 bits (74), Expect = 5.4
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +2

Query: 170 EICDAIALFVTIISCNKQVNNNNCIHFMFQVQGEVWEVFSALMNRPTRGERRFAYW 337
           +  DA   F+ I   N  +N+++C   + +V  +VWE  +     P RG  +F YW
Sbjct: 32  DFSDAYRRFIYIALRNNGLNHHDCEEVVQRVMIKVWEKIARFKYNPGRG--KFRYW 85


>UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1;
           Methanocorpusculum labreanum Z|Rep: Putative
           uncharacterized protein - Methanocorpusculum labreanum
           (strain ATCC 43576 / DSM 4855 / Z)
          Length = 109

 Score = 33.9 bits (74), Expect = 5.4
 Identities = 21/55 (38%), Positives = 28/55 (50%)
 Frame = -2

Query: 250 KMNAIVVVNLFIAAYNGYK*SNSITNFTNKAFFSLHSSCGLSKLINVSYHVWIQL 86
           +MNA V +  FIAA      +  +T +   AFF L S  G    ++VSY VW  L
Sbjct: 27  RMNAWVDLAAFIAAV-----ATCVTGYVLWAFFPLGSGRGAMNFLDVSYQVWYDL 76


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 629,589,293
Number of Sequences: 1657284
Number of extensions: 10487009
Number of successful extensions: 25067
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 24067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25049
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 77882636090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)