Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_F24
(878 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0008 - 13674602-13674708,13675272-13675439,13676169-136767... 32 0.70
07_03_1530 + 27502546-27502671,27503487-27503561,27504670-275047... 31 1.6
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468... 30 2.8
08_02_1250 - 25586442-25587023,25587141-25587827,25588389-25589492 29 3.7
08_02_1084 - 24232968-24234779 29 3.7
10_08_0608 + 19184722-19185224,19185331-19185410,19186048-191862... 29 6.5
09_04_0745 + 19884868-19886000,19886110-19886309,19886422-198866... 29 6.5
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 29 6.5
05_04_0204 - 19022329-19023990 29 6.5
10_08_0786 - 20540061-20542106 28 8.6
>03_03_0008 - 13674602-13674708,13675272-13675439,13676169-13676787,
13676868-13677330,13677855-13678036,13678093-13678235,
13678315-13678423,13679000-13679456,13680490-13682473,
13682507-13682626,13682920-13682971
Length = 1467
Score = 31.9 bits (69), Expect = 0.70
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +1
Query: 796 PPXLXVXPPNEPXLXDXPPPLPPXP 870
PP PP+ P L PPP+PP P
Sbjct: 1116 PPLPDDRPPSPPPLPSSPPPVPPPP 1140
>07_03_1530 + 27502546-27502671,27503487-27503561,27504670-27504746,
27505576-27507522,27508478-27508946,27509898-27510079,
27510746-27511208,27511295-27511691,27511810-27511937,
27512106-27512273,27512452-27512559,27512830-27512838
Length = 1382
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/41 (36%), Positives = 17/41 (41%)
Frame = +1
Query: 748 LSPXRCYVLFXGRXXXPPXLXVXPPNEPXLXDXPPPLPPXP 870
L+ RC PP PP+ P L PPPLP P
Sbjct: 1046 LTVARCATTKQNVDSVPPLPDDKPPSPPPLPSSPPPLPRPP 1086
>08_01_0539 +
4679392-4681282,4682060-4682104,4682403-4683560,
4683834-4684204,4684290-4684835,4684927-4685027,
4685117-4685933,4686025-4686213,4686313-4686384,
4686477-4686587,4686647-4686652,4686694-4686794,
4687714-4687813,4687891-4687986,4688157-4688273,
4688367-4688492,4688566-4688619,4688745-4688992,
4689087-4689195,4689284-4689583,4689799-4689963
Length = 2240
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +1
Query: 796 PPXLXVXPPNEPXLXDXPPPLPPXP 870
PP PP P + PPPLPP P
Sbjct: 432 PPPPPPPPPPPPLPPNMPPPLPPPP 456
>08_02_1250 - 25586442-25587023,25587141-25587827,25588389-25589492
Length = 790
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +1
Query: 772 LFXGRXXXPPXLXVXPPNEPXLXDXPPPLPPXP 870
LF G P L V P P + + P P PP P
Sbjct: 17 LFEGMVLFTPSLSVDPDPAPPVAEAPDPKPPTP 49
>08_02_1084 - 24232968-24234779
Length = 603
Score = 29.5 bits (63), Expect = 3.7
Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Frame = -1
Query: 863 GGRGGGXSXRXGSXGGXTXRXGGXXXR-PXXRT*HRXGDKRXG 738
GGRGGG G GG R GG R P +R G G
Sbjct: 307 GGRGGGPGGGAGGGGGNWGRGGGGMGRGPAGNMRNRMGGPAGG 349
>10_08_0608 +
19184722-19185224,19185331-19185410,19186048-19186235,
19187021-19187927,19188015-19188142,19189270-19189356,
19189422-19189472,19189582-19189668,19189746-19189873,
19190469-19190608,19190721-19190882,19190964-19192733,
19192807-19192922,19193077-19193227,19193243-19193371,
19193598-19194139
Length = 1722
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +1
Query: 769 VLFXGRXXXPPXLXVXPPNEPXLXDXPPPLPPXP 870
+L G PP L + PP P PPPL P P
Sbjct: 11 LLSPGEAEWPPELRLPPPPPPH-PPPPPPLEPAP 43
>09_04_0745 +
19884868-19886000,19886110-19886309,19886422-19886666,
19886880-19887668
Length = 788
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +1
Query: 796 PPXLXVXPPNEPXLXDXPPPLPP 864
PP V PP P PPP+PP
Sbjct: 257 PPPQSVRPPPPPPPPPPPPPMPP 279
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 796 PPXLXVXPPNEPXLXDXPPPLP 861
PP L + P P L + PPPLP
Sbjct: 1129 PPPLPLDAPPPPPLPEGPPPLP 1150
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Frame = +1
Query: 796 PPXLXVXPPNEPX---LXDXPPPLPPXP 870
PP L PP +P L PPP+PP P
Sbjct: 1185 PPPLPSGPPPQPAPPPLPIQPPPIPPPP 1212
>05_04_0204 - 19022329-19023990
Length = 553
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 280 IEKSCDXYMNVDVVKXFMEMYKMGXLPRGETF 375
+ K CD + + VVK F +M K G P TF
Sbjct: 355 MRKLCDEHRWLSVVKLFTDMAKKGIAPNSWTF 386
>10_08_0786 - 20540061-20542106
Length = 681
Score = 28.3 bits (60), Expect = 8.6
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +1
Query: 316 VVKXFMEMYKMGXLPRGETFVHTNELQMEEAVKVFRVLYYAK 441
V K +EM KMG +PR E H +EE VK ++ Y+++
Sbjct: 578 VAKLDLEMRKMGYIPRTEFVYH----DLEEEVKEQQLSYHSE 615
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,842,272
Number of Sequences: 37544
Number of extensions: 373228
Number of successful extensions: 1437
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1347
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -