Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_F24
         (878 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical pr...    32   0.47 
Z77657-6|CAB01150.2|  607|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of pr...    29   5.8  
U55364-13|AAM29677.1|  250|Caenorhabditis elegans Hypothetical p...    29   5.8  
U55364-12|AAA97977.2|  260|Caenorhabditis elegans Hypothetical p...    29   5.8  
U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion...    29   5.8  
U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion...    29   5.8  

>U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical
           protein C34D4.11 protein.
          Length = 136

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 15/29 (51%), Positives = 15/29 (51%)
 Frame = -1

Query: 869 G*GGRGGGXSXRXGSXGGXTXRXGGXXXR 783
           G GGRGGG   R G  GG   R GG   R
Sbjct: 100 GGGGRGGGGGGRGGGGGGGGGRGGGGGGR 128



 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/29 (48%), Positives = 14/29 (48%)
 Frame = -1

Query: 869 G*GGRGGGXSXRXGSXGGXTXRXGGXXXR 783
           G GGRGGG     G  GG   R GG   R
Sbjct: 107 GGGGRGGGGGGGGGRGGGGGGRGGGGRGR 135



 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = -1

Query: 869 G*GGRGGGXSXRXGSXGGXTXRXGG 795
           G GGRGGG     G  GG   R GG
Sbjct: 90  GGGGRGGGGGGGGGRGGGGGGRGGG 114


>Z77657-6|CAB01150.2|  607|Caenorhabditis elegans Hypothetical
           protein F08H9.1 protein.
          Length = 607

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -3

Query: 468 RSPHENIEVLSVVEDSEDFD 409
           R+P+ENI++L   +DSED D
Sbjct: 581 RAPYENIDLLLSTDDSEDID 600


>U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of
            presynaptic activity protein.
          Length = 1409

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 26/75 (34%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
 Frame = +1

Query: 652  RTPV-PLG-NXTASPLTXDXLXMXXWAXGTPPXLLSPXRCYVLFXGRXXXPPXLXVXPPN 825
            RTP  PLG N T +      +     +   PP +  P R       R   PP L   PP 
Sbjct: 935  RTPTKPLGQNVTPTSTNNHEIAQSTRSPALPPPV--PPREAPPIPKRN--PPPLGA-PPK 989

Query: 826  EPXLXDXPPPLPPXP 870
             P     PPPLPP P
Sbjct: 990  VPEGARAPPPLPPRP 1004


>U55364-13|AAM29677.1|  250|Caenorhabditis elegans Hypothetical
           protein F21C10.3b protein.
          Length = 250

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = -1

Query: 869 G*GGRGGGXSXRXGSXGGXTXRXGGXXXRPXXRT*HRXGDKRXGGV 732
           G GGRGGG     G  G  +   GG   RP  R+  R      GG+
Sbjct: 28  GGGGRGGGGRGGRGRSGARSG-VGGSRSRPQMRSGIRGSSSFSGGI 72


>U55364-12|AAA97977.2|  260|Caenorhabditis elegans Hypothetical
           protein F21C10.3a protein.
          Length = 260

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = -1

Query: 869 G*GGRGGGXSXRXGSXGGXTXRXGGXXXRPXXRT*HRXGDKRXGGV 732
           G GGRGGG     G  G  +   GG   RP  R+  R      GG+
Sbjct: 28  GGGGRGGGGRGGRGRSGARSG-VGGSRSRPQMRSGIRGSSSFSGGI 72


>U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion
            defective protein3, isoform b protein.
          Length = 1408

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 26/75 (34%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
 Frame = +1

Query: 652  RTPV-PLG-NXTASPLTXDXLXMXXWAXGTPPXLLSPXRCYVLFXGRXXXPPXLXVXPPN 825
            RTP  PLG N T +      +     +   PP +  P R       R   PP L   PP 
Sbjct: 935  RTPTKPLGQNVTPTSTNNHEIAQSTRSPALPPPV--PPREAPPIPKRN--PPPLGA-PPK 989

Query: 826  EPXLXDXPPPLPPXP 870
             P     PPPLPP P
Sbjct: 990  VPEGARAPPPLPPRP 1004


>U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion
            defective protein3, isoform a protein.
          Length = 1409

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 26/75 (34%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
 Frame = +1

Query: 652  RTPV-PLG-NXTASPLTXDXLXMXXWAXGTPPXLLSPXRCYVLFXGRXXXPPXLXVXPPN 825
            RTP  PLG N T +      +     +   PP +  P R       R   PP L   PP 
Sbjct: 935  RTPTKPLGQNVTPTSTNNHEIAQSTRSPALPPPV--PPREAPPIPKRN--PPPLGA-PPK 989

Query: 826  EPXLXDXPPPLPPXP 870
             P     PPPLPP P
Sbjct: 990  VPEGARAPPPLPPRP 1004


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,237,341
Number of Sequences: 27780
Number of extensions: 265388
Number of successful extensions: 812
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)