Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_F22
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    26   5.9  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    26   5.9  
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc...    26   7.8  

>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = +3

Query: 39   DLTXFGQFCSSGISRSATVMDKLLLLVTLVCGTQAFYMFGHEFSRTRLGDAIDK 200
            DLT        G S  + ++  L L+  L+C       F   F + RL   I+K
Sbjct: 1042 DLTRTYHLIPRGSSTVSIILFSLFLVSPLICALATMLAFQKFFYQVRLNKGIEK 1095


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +1

Query: 541 MPLISSTVGRTNRLKDT*RLLVSEDKIDPATAVAMFNVIFFQGAL 675
           +P +   +GR  RL    +LL   +  DP +  +M NV  ++G +
Sbjct: 369 LPALIRALGRAKRLNSCFQLLERYNLSDPTSDTSMTNVRSWEGLM 413


>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 465

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 426 TVANKIYVSDQYKLADAFSRTANLFRSEVDNINFSA 533
           T+  ++Y S  Y++ D  S+  +  R  + N+NF A
Sbjct: 303 TLPTRVYGSSCYRMKDIESKLQSEGRGFIHNLNFKA 338


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,313,550
Number of Sequences: 5004
Number of extensions: 65386
Number of successful extensions: 165
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)