Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_F22
(850 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0824 - 32243495-32244319,32244449-32244859 42 6e-04
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 38 0.010
03_05_0294 + 22855503-22855946,22856346-22856399 34 0.12
11_01_0750 - 6315126-6315896,6316371-6316784 32 0.66
07_03_1531 + 27515829-27516046,27516238-27516451,27517223-275173... 32 0.66
09_06_0317 - 22265786-22267618,22267874-22268446,22268546-222686... 31 1.5
11_02_0011 - 7337618-7338496,7338596-7338991 30 2.0
06_01_0059 - 510856-511499,511595-511805 29 4.7
11_02_0012 - 7346282-7347136,7347234-7347593 29 6.2
11_01_0767 + 6438648-6438809,6439146-6440000 29 6.2
04_04_0833 + 28510568-28510755,28511408-28511630 29 6.2
11_01_0771 + 6453130-6454488 28 8.2
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 41.9 bits (94), Expect = 6e-04
Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 10/128 (7%)
Frame = +3
Query: 243 DKNVIASPLGVMLLLSLYESGAGAQSKEEIREILG--GGEAQESTHTYGLLNQRYAEFDP 416
DKN+ SPL + L+L +GA ++ ++I LG GG A + ++ L + P
Sbjct: 31 DKNLAVSPLSLHAALALLGAGARGETLDQIIAFLGPAGGPAHAALASHVALCSLADDSGP 90
Query: 417 ------KFLTVANKIYVSDQYKLADAFSR-TANLFRSEVDNINF-SAPXNAADIINRWAD 572
+ AN ++V +L A++R A+ +R+E ++F A IN W +
Sbjct: 91 GDDRGGPKVRFANGVWVDAALRLKAAYARVVADKYRAEARPVSFRDKLEEARREINEWFE 150
Query: 573 EQTQGHIK 596
T G IK
Sbjct: 151 SATAGRIK 158
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 37.9 bits (84), Expect = 0.010
Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 12/115 (10%)
Frame = +3
Query: 246 KNVIASPLGVMLLLSLYESGAGAQSKEEIREILGGGEAQESTHTYG------LLNQRYAE 407
+NV SPL + + LSL +GAG +++++ LGG + E H + +L
Sbjct: 35 RNVAFSPLSLHVALSLVAAGAGGATRDQLASALGGPGSAEGLHAFAEQLVQLVLADASGA 94
Query: 408 FDPKFLTVANKIYVSDQYKLADAFSRTA-NLFRSEVDNINFSA-----PXNAADI 554
P+ + A+ ++V L F A +++E +++F P N A+I
Sbjct: 95 GGPR-VAFADGVFVDASLSLKKTFGDVAVGKYKAETHSVDFQTKWLLLPSNLANI 148
>03_05_0294 + 22855503-22855946,22856346-22856399
Length = 165
Score = 34.3 bits (75), Expect = 0.12
Identities = 25/105 (23%), Positives = 50/105 (47%), Gaps = 8/105 (7%)
Frame = +3
Query: 237 ADDKNVIASPLGVMLLLSLYESGAGAQSKEEIREILG--GGEAQESTHTYG--LLNQRYA 404
A NV SPL + + LSL +GAG +++++ +LG G E H + ++ A
Sbjct: 41 AGGSNVAFSPLSLHVALSLVAAGAGGATRDQLVSLLGVPGRGTAEGLHAFAEQVVQLVLA 100
Query: 405 EFDP---KFLTVANKIYVSDQYKLADAFSRTA-NLFRSEVDNINF 527
+ P + A+ +++ L +F A +++E +++F
Sbjct: 101 DSSPAGGPRVAFADGVFIDSSLSLMKSFKDVAVGKYKAETHSVDF 145
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 31.9 bits (69), Expect = 0.66
Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 12/129 (9%)
Frame = +3
Query: 249 NVIASPLGVMLLLSLYESGAGAQSKEEIREILG------GGEAQE----STHTYGLLNQR 398
N S V + L+L GA ++ ++ + LG GG A S +L R
Sbjct: 33 NAAVSAPAVHVSLALAAGGARGATRRQVLQALGCGGGGRGGAADAANVASRVVKRVLRDR 92
Query: 399 YAEFDPKFLTVANKIYVSDQYKLADAFSRTA-NLFRSEVDNINF-SAPXNAADIINRWAD 572
P+ L A ++ L+ F A N++ S +F + P +A D IN W
Sbjct: 93 STSGGPR-LAFAGGVWADASRSLSPEFVGLAGNVYGSAAKKADFKNKPEDAPDQINSWVK 151
Query: 573 EQTQGHIKT 599
+ T+G + T
Sbjct: 152 DSTKGTVTT 160
>07_03_1531 +
27515829-27516046,27516238-27516451,27517223-27517327,
27517432-27517830
Length = 311
Score = 31.9 bits (69), Expect = 0.66
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = -2
Query: 645 HCNGRGGVNFVFADQESL---CVLESVRPP 565
HC RGGV+F+F +S+ C LES PP
Sbjct: 209 HCYVRGGVDFIFGYGQSIYDNCTLESNMPP 238
>09_06_0317 -
22265786-22267618,22267874-22268446,22268546-22268677,
22268931-22269137,22269287-22269388,22270742-22271032
Length = 1045
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -2
Query: 366 TLEPPLPQGFPLSLPWTVHRLQTRTRKAAAS 274
+L PPLP G PLS P+ QT + A S
Sbjct: 751 SLRPPLPPGLPLSSPFVCPTTQTSEKAAPLS 781
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 30.3 bits (65), Expect = 2.0
Identities = 28/124 (22%), Positives = 59/124 (47%), Gaps = 8/124 (6%)
Frame = +3
Query: 234 LADDKNVIASPLGVMLLLSLYESGAGAQSKEEIREILGGG---EAQESTH---TYGLLNQ 395
++ +KN++ SP + L+L +GA + +E+ +LG + +ES GL ++
Sbjct: 27 VSSNKNLVFSPASLYAALALVAAGARGTTLDELLALLGAASLDDLEESVRRAVEVGLADE 86
Query: 396 RYAEFDPKFLTVANKIYVSDQYKLADAF-SRTANLFRSEVDNINFS-APXNAADIINRWA 569
A P+ ++ A ++ + +L A+ + A +++ NF P + IN+W
Sbjct: 87 S-ASGGPR-VSDACGVWHDETLELKPAYRAAAAGTYKAVTRAANFQRQPKRSRKKINKWV 144
Query: 570 DEQT 581
+ T
Sbjct: 145 SKAT 148
>06_01_0059 - 510856-511499,511595-511805
Length = 284
Score = 29.1 bits (62), Expect = 4.7
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = +3
Query: 276 MLLLSLYESGAGAQSKEEIREILGGGEAQESTHTYGLLNQRYAEFD-PKFLTVANKIYVS 452
+LL + GAG S ++ GGG ++ H +G+ Q +A D LTV Y +
Sbjct: 197 LLLYVMNVGGAGDVSSLSVKTSGGGGAWIQAAHNWGITYQVFAALDNSDGLTVKLTTYST 256
Query: 453 DQYKL--ADAFS 482
Q + +DA S
Sbjct: 257 PQQTIIVSDAIS 268
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Frame = +3
Query: 216 LKESYNLADD-----KNVIASPLGVMLLLSLYESGAGAQSKEEIREILGGGEAQE 365
L+ + LADD +NV+ SP+ + L+L SGA + +E+ +LG +
Sbjct: 16 LRLAKRLADDGDNSNRNVVFSPVSLYAALALVASGARGTTLDELVALLGAASLDD 70
>11_01_0767 + 6438648-6438809,6439146-6440000
Length = 338
Score = 28.7 bits (61), Expect = 6.2
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +2
Query: 665 RGHWHVPFNASETEEKDFHXDEKTIIKKPTMR 760
+G W PF+ S+T E++F + + ++ P M+
Sbjct: 98 KGEWLAPFDKSDTAEREFRRLDGSSVEVPFMQ 129
>04_04_0833 + 28510568-28510755,28511408-28511630
Length = 136
Score = 28.7 bits (61), Expect = 6.2
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +3
Query: 525 FSAPXNAADII---NRWADEQTQGHIKTPGQRRQN*PRHG 635
F + + DI+ RW +Q QG KT G+R Q+ HG
Sbjct: 97 FQSEWDPLDIVLGNERWEQQQGQGQKKTCGKRAQSELHHG 136
>11_01_0771 + 6453130-6454488
Length = 452
Score = 28.3 bits (60), Expect = 8.2
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 246 KNVIASPLGVMLLLSLYESGAGAQSKEEIREILGGGEAQE 365
+N+ SPL V LSL +GA + +EI +LG +
Sbjct: 37 RNLAFSPLSVHAALSLAAAGAAGGTLDEILAVLGAASRDD 76
Score = 28.3 bits (60), Expect = 8.2
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 665 RGHWHVPFNASETEEKDFH 721
+G W PFN S+TE K F+
Sbjct: 213 KGKWDRPFNESDTERKPFY 231
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,481,759
Number of Sequences: 37544
Number of extensions: 475626
Number of successful extensions: 1345
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1345
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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