Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_F21
         (846 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    27   3.3  
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo...    26   5.8  
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc...    26   7.7  
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo...    26   7.7  

>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = +2

Query: 620 VALTRKYVIITELSKKTNNS*CTPTIPISWTYPNNEDRIAYLTEDVG----LNAYYYYFH 787
           V L  +Y I+TE++K    S  +PT PI +T   + D  A +  D G    L+  Y YF 
Sbjct: 61  VHLENEYNILTEIAKDERASKFSPT-PIEFTSFPHIDLSACIAYDFGHGAELSTSYAYFR 119

Query: 788 SH 793
            +
Sbjct: 120 EN 121


>SPAC20G8.10c ||SPAC3A12.01c|beclin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 464

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +1

Query: 550 EAYPQYFVNMEVKNKMDYVKMMDGC--LDEKICYNYGIIKENEQFVMYANYSNFLDLPQQ 723
           E Y + F  +  K K+D+   ++    L E++      +KE ++  MY NY NFL     
Sbjct: 123 EIYNRIFDLLSSKTKVDHPLCVECAELLTEEMSKTLRALKEEKK--MYFNYDNFLSSQTV 180

Query: 724 RRQN 735
             +N
Sbjct: 181 HEEN 184


>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 615

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 15/58 (25%), Positives = 32/58 (55%)
 Frame = -1

Query: 480 EHSLVHVDSGVACCFVETFKIXGIIEQLEQRDGFFPHFFVKDREFQILGKESDLVHHH 307
           ++ +++VD  +A CFV+  +  G    LE+ + +  +  + +  F +LG+   L+ HH
Sbjct: 539 DNLILNVDGCIAVCFVDLLRNCGAF-TLEEANEYI-NLGILNGMF-VLGRSIGLIGHH 593


>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = -1

Query: 324 DLVHH-HEIFVGFHVCVAVLAGLDVEVLGDFVVLSFIVDLVNVVEKRQNLLLLF 166
           DL HH +  F GF VC+  ++  + + + D + L   ++ +NVV    N++ +F
Sbjct: 243 DLEHHDYRSFRGF-VCLMQISNREKDWIVDTLELREELEALNVVFTNPNIIKVF 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,363,132
Number of Sequences: 5004
Number of extensions: 69456
Number of successful extensions: 228
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)